Sequence
atgc intronic sequence ATGC exonic sequencegtgatttttctccacccttcctcttcagtgaaaataccagaagcctatttggtttccaaactgttttctatttaaaatttatccaaaatgtttatgataaaatgttaaggtaagatggaatgattaatgatttaaaatgttgggggaattgcagGATGAGCTATTGTGGGCAGCAACATGGCTATACATTGCCACAAGGAAGCCAAAATACTTGAAATACATACAGGAAGAATCCATAAGTGCAAGTGTAGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g02020.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G05950.1 (Glycine max), 3'ss of exon 4
gtgatttttctccacccttcctcttcagtgaaaataccagaagcctatttggtttccaaactgttttctatttaaaatttatccaaaatgtttatgataaaatgttaaggtaagatggaatgattaatgatttaaaatgttgggggaattgcagGATGAGCTATTGTGGGCAGCAACATGGCTATACATTGCCACAAGGAAGCCAAAATACTTGAAATACATACAGGAAGAATCCATAAGTGCAAGTGTAGCTG
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----------------------------------------------gttcagatgataaattaatttct--ccggaatttacc---aaccttta--atttaatttcataattagtgcaaattaacgtatgtgaatggtgttggtgggat-gcagGACGAGATGATGTGGGCAGCAACATGGCTATACATGGCAACCAGGAAGTCTGTGTATATGAAGTACATAACAGAAGAATGCATGAGTGCAAGTGTAGCAG
upper sequence: Vv04s0008g02020.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G05930.1 (Glycine max), 3'ss of exon 4
gtgatttttctccacccttcctcttcagtgaaaataccagaagcctatttggtttccaaactgttttctatttaaaatttatccaaaatgtttatgataaaatgttaaggtaagatggaatgattaatgatttaaaatgttgggggaattgcagGATGAGCTATTGTGGGCAGCAACATGGCTATACATTGCCACAAGGAAGCCAAAATACTTGAAATACATACAGGAAGAATCCATAAGTGCAAGTGTAGCTG
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----------------------------------------------------cacatgactcagatcatataacaatttctcctaaattatgaatcgttaatttcataattagtgcaaattaacgtatg-tgaatggtgttggtgagat-gcagGACGAGATGATGTGGGCAGCAACATGGCTATACATGGCAACCAGGAAGTCTGTGTATATGAAGTACATAACAGAAGAATGCATGAGTGCAAGTGTAGCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689427|gb|EC939263.1|EC939263EST: GAACTTATGATGGAGAATGCCCCTTCTATTGCTCCTTCTCAGGCTACAAT GATGAGCTATTGTGGGCAGCAACATGGCTATACATTGCCACAAGGAAGCCA
genomic: GAACTTATGATGGAGAATGCCCTTTCTATTGCTCCTTCTCAGGCTACAATgtgatttttc ... ggaattgcagGATGAGCTATTGTGGGCAGCAACATGGCTATACATTGCCACAAGGAAGCCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatgttaaggtaagatggaatgattaatgatttaaaatgttgggggaattgcagGATGAGCTATTGTGGGCAGCAACATGGCTATACATTGCCACAAGGAAGCCAAAATACTTGAAATACATACAGGAAGAATCCATAAGTGCAAGTGTAGCTG
gattaat putative branch site (score: 3)
aatgattaatgattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgatttttctccacccttcctcttcagtgaaaataccagaagcctatttggtttccaaactgttttctatttaaaatttatccaaaatgtttatgataaaatgttaaggtaagatggaatgattaatgatttaaaatgttgggggaattgcagGATGAGCTATTGTGGGCAGCAACATGGCTATACATTGCCACAAGGAAGCCAAAATACTTGAAATACATACAGGAAGAATCCATAAGTGCAAGTGTAGCTG
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