1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tattgaagatcatatgttactctgtcactaacctttcttatgcctggcttcatttaatgcatactgtttctgatttcttatctgatgacttactgaacagGCTGCAGAAAAGCAGAAGTGACATGCAAAATATAGCAAGAAGAGGTTTCCAAATGCATTAGGTAGCTCACAATCTCTACCAATTCTAACTACAGGTACTT
species | Vitis vinifera |
transcript | Vv03s0088g00390.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGCTGGATATCAATCATTTGAAGAATCTGTTTTAAAGAAACTTCAAAAG GCTGCAGAAAAGCAGAAGTGACATGCAAAATATAGCAAGAAGAGGTTTCCAEST: gi|71880071|gb|DT029126.1|DT029126
genomic: GAGCTGGATATCAATCATTTGAAGAATCTGTTTTAAAGAAACTTCAAAAGgtttgaattt ... tactgaacagGCTGCAGAAAAGCAGAAGTGACATGCAAAATATAGCAAGAAGAGGTTTCCA
EST: GAGCTGGATATCAATCATTTGAAGAATCTGTTTTAAAGAAACTTCAAAAG GCTGCAGAAAAGCAGAAGTGACATGCAAAATATAGCAAGAAGAGGTTTCCAEST: gi|71878246|gb|DT027301.1|DT027301
genomic: GAGCTGGATATCAATCATTTGAAGAATCTGTTTTAAAGAAACTTCAAAAGgtttgaattt ... tactgaacagGCTGCAGAAAAGCAGAAGTGACATGCAAAATATAGCAAGAAGAGGTTTCCA
EST: GAGCTGGATATCAATCATTTGAAGAATCTGTTTTAAAGAAACTTCAAAAG GCTGCAGAAAAGCAGAAGTGACATGCAAAATATAGCAAGAAGAGGTTTCCA
genomic: GAGCTGGATATCAATCATTTGAAGAATCTGTTTTAAAGAAACTTCAAAAGgtttgaattt ... tactgaacagGCTGCAGAAAAGCAGAAGTGACATGCAAAATATAGCAAGAAGAGGTTTCCA
ggcttcatttaatgcatactgtttctgatttcttatctgatgacttactgaacagGCTGCAGAAAAGCAGAAGTGACATGCAAAATATAGCAAGAAGAGGTTTCCAAATGCATTAGGTAGCTCACAATCTCTACCAATTCTAACTACAGGTACTT
gacttac putative branch site (score: 2)
atttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgaagatcatatgttactctgtcactaacctttcttatgcctggcttcatttaatgcatactgtttctgatttcttatctgatgacttactgaacagGCTGCAGAAAAGCAGAAGTGACATGCAAAATATAGCAAGAAGAGGTTTCCAAATGCATTAGGTAGCTCACAATCTCTACCAATTCTAACTACAGGTACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - -cactaac
- - - - - - - - - - - - - - - - - - - - tgcctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatact