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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacttacaattcacaatggctctgtttcaacctgcttttatttattcttgtttttaattagttgagtatgtatatcttttttaatttgaagGACGTATTGTTCGTGGACAGTGGCGACCCATGGAATCCGCTGCCTGAAACAGTAAACAAGGCAATGGCAACACTTCAAGGTGTTCATAGGGTTCTCAAAC

Basic information

species Vitis vinifera
transcript Vv03s0063g02010.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0063g02010.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G12910.1 (Glycine max), 3'ss of exon 4
--------------------------------------gtaaacttacaattcacaatggctctgtttcaacctgcttttatttattcttgtttttaattagttgagtatgtatatc--ttttttaatttgaagGACGTATTGTTCGTGGACAGTGGCGACCCATGGAATCCGCTGCCTGAAACAGTAAACAAGGCAATGGCAACACTTCAAGGTGTTCATAGGGTTCTCAAAC
                                       | |  | |   || | | |     |  |    ||||  |       |  |||   || ||   || | |  |  | |   ||||  ||||||||||| |||||||||||||||||||| ||||||||||||||   |||||||||  ||  |||||  ||||| ||| |  |||||||||| |||||| | ||| 
gtaaattgaataattttcctttgatctatgatgggattttgacttgatgttttaaactaatgattatggttcctgtatgatcgagtgtttgaagtttatggattaaatgcgattcttggttttgaaatttgaagGATGTATTGTTCGTGGACAGTGGTGACCCATGGAATCCAAAGCCTGAAACTATATTCAAGGTCATGGCCACATTGAAAGGTGTTCACAGGGTTTTGAAAG

upper sequence: Vv03s0063g02010.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G05040.1 (Glycine max), 3'ss of exon 2
------------gtaaacttacaattcacaatgg--ctctgtttcaacctgctt--ttatttattcttgtttttaattagttgagtatgt----------------atatcttttttaatttg-aagGACGTATTGTTCGTGGACAGTGGCGACCCATGGAATCCGCTGCCTGAAACAGTAAACAAGGCAATGGCAACACTTCAAGGTGTTCATAGGGTTCTCAAAC
             |   | |   ||     ||||   | ||  |  |  |  |    || | | | | |||  ||| |  | |||| | |                || |  || ||  |||| ||||| ||||||||||||||||||||  |||||||||||||   |||||||||  ||  |||||  ||||| ||  |  ||||||||||  ||||| | ||| 
gtaaattgaatgattttcctttgatctgtgatgggattttgacttgatgttttaaactaatgactatggttcctaaatgatcgagtgtttgaagtttgtgggttaaatgtgattcttggtttggaagGATGTATTGTTCGTGGACAGTGGTAACCCATGGAATCCAAAGCCTGAAACTATATCCAAGGTCATGGCCACGTTGAAAGGTGTTCACGGGGTTTTGAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110427102|gb|EC993533.1|EC993533
EST:     TGCCCTTTAGCAACGAGTGTTTTGATGTGGTTATTGAGAAAGGAACCATG                         GACGTATTGTTCGTGGACAGTGGCGACCCATGGAATCCGCTGCCTGAAACA
genomic: TGCCCTTTAGCAACGAGTGTTTTGATGTGGTTATTGAGAAAGGAACCATGgtaaacttac ... taatttgaagGACGTATTGTTCGTGGACAGTGGCGACCCATGGAATCCGCTGCCTGAAACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatttattcttgtttttaattagttgagtatgtatatcttttttaatttgaagGACGTATTGTTCGTGGACAGTGGCGACCCATGGAATCCGCTGCCTGAAACAGTAAACAAGGCAATGGCAACACTTCAAGGTGTTCATAGGGTTCTCAAAC
                                          ttttaat  putative branch site (score: 3)
                                    tatctttttt  CT-rich tract
              tttttaattagttgag  TA-rich tract