Sequence
atgc intronic sequence ATGC exonic sequence...gaaatctattatttctttttccttttgtgaatgttgtgttggtttttagtgaaaaattagaaaaaattggtgtattttacatgaaatgtgcttttttcagGCCAAGCTTCTATATAATGTTCCTTTCTCGGAAGATGAGCGTCAAAATATTAAGTTCATGATCCAGACCAACTTGTATTGCTATCTTGGTATATTGCTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g01780.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G05180.1 (Glycine max), 3'ss of exon 4
----gaaatctattatttctttttccttttgtgaatgttgtgttggtttttagtgaaaaattagaaaaaattggtgtattttacatgaaatgtgcttttttcagGCCAAGCTTCTATATAATGTTCCTTTCTCGGAAGATGAGCGTCAAAATATTAAGTTCATGATCCAGACCAACTTGTATTGCTATCTTGGTATATTGCTTG
| | ||| | ||| | | | | ||| | || |||| ||| || | | || || | | | || | || || |||||||||||| | ||||||||||||||||| ||| ||||||| ||||| || ||||| | || || | |||||||||| | || ||||| ||| | || |
ttttgtggtgtat-agttccctgacatatgaggaactctaggtaatttttaagttgaagccttcagtt--ttagtaacactaagactgaactt-tttattgcagGCCAAGCTTTTGTATAATGTTCCTTTCTCTGAAAATGAGCGCCAAAACATCAAGTTGGTAATTCAAAGCAACTTGTATAGGTACCTTGGGATAATACTGG
upper sequence: Vv03s0063g01780.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G13120.1 (Glycine max), 3'ss of exon 5
gaaatctattatttctttttccttttgtgaatgttgtgttggtttttagtgaaaaattagaaaaaattggtgtattttacatgaaatgtgcttttttcagGCCAAGCTTCTATATAATGTTCCTTTCTCGGAAGATGAGCGTCAAAATATTAAGTTCATGATCCAGACCAACTTGTATTGCTATCTTGGTATATTGCTTG
|| | | | || | || || |||||||||||||| |||||||||||| |||| ||| ||||||| ||||| || ||| | | || || | |||||||||| | || ||||| || | || |
---------------------------------------------------------------------gtaacactaagactcaacct-tttattgcagGCCAAGCTTCTGTATAATGTTCCTCTCTCTGAAAATGAGCGCCAAAACATCAAGCTGGTAATTCAAAGCAACTTGTATAGGTACCTTGGGTTAATACTGG
upper sequence: Vv03s0063g01780.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G21110.1 (Glycine max), 3'ss of exon 6
gaaatctattatttctt--tttccttttgtgaatgttgtgttg-gtttttagtgaaaaattagaaaaaattggtgtattttacatgaaatgtgcttttttcagGCCAAGCTTCTATATAATGTTCCTTTCTCGGAAGATGAGCGTCAAAATATTAAGTTCATGATCCAGACCAACTTGTATTGCTATCTTGGTATATTGCTTG
||| | | | | | | || ||||| | || ||||| | |||| | || | ||| | | | || | | ||||||||||||| ||||||| ||||||||| ||| |||||| |||||||| |||| ||||||| | ||| ||| | ||| ||||||||| |||| |
-tcttctggtgtgtatgagactgcagttctgaatacttctttatacttttaattaaaaccttgattt--tgagtgacactaatgactgaaccttttatcttagGCCAAGCTTCTGTATAATGATCCTTTCTCTGAAAATGAGCTCCAAAATATCAAGTCGGTGATCCAAAGTAACCTGTTTACCTACCTTGGTATACTGCTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttagtgaaaaattagaaaaaattggtgtattttacatgaaatgtgcttttttcagGCCAAGCTTCTATATAATGTTCCTTTCTCGGAAGATGAGCGTCAAAATATTAAGTTCATGATCCAGACCAACTTGTATTGCTATCTTGGTATATTGCTTG
tgcttttttc CT-rich tract
aaaaattagaaaaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaaatctattatttctttttccttttgtgaatgttgtgttggtttttagtgaaaaattagaaaaaattggtgtattttacatgaaatgtgcttttttcagGCCAAGCTTCTATATAATGTTCCTTTCTCGGAAGATGAGCGTCAAAATATTAAGTTCATGATCCAGACCAACTTGTATTGCTATCTTGGTATATTGCTTG
- - - - - - - - - - - - - gtgaatg
- - - - - - - - - - - - - - - - - -gtgttgg
- - - - - - - - - - - - - - - - - - - - - - - - -tgaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaaa