Sequence
atgc intronic sequence ATGC exonic sequencegtttggttggcactcatctttttgtttattaattttgagacacttccttatttcttgcttttgttacagACTGGAAAAGCTTTTACTGCAAAGGGAATGCAAGTGCTGGAGCTTGTTGGTAAGGAGACCATGGACTTACTGATCACAGAGACTGGTATTGAAATTGAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g01360.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G29660.1 (Glycine max), 3'ss of exon 4
-------------------gtttggttggcactcatctttt-tgtttattaattttgagacacttccttatttcttgcttttgttacagACTGGAAAAGCTTTTACTGCAAAGGGAATGCAAGTGCTGGAGCTTGTTGGTAAGGAGACCATGGACTTACTGATCACAGAGACTGGTATTGAAATTGAGA
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gtttggaaaaattgtcattcttcatttgatattcattatcagtaattacaaatatacatgcatatttct-tctattcattgtgctacagACAGGAAAAGCTTTTACTGCAAAGGGAATGCAAGTGCTTGAATATGTTGGTAAGGAGACAATGGACTTATTAATCAGTGAAACTGGAATTGAAGTTGAGA
upper sequence: Vv03s0063g01360.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G01190.1 (Glycine max), 3'ss of exon 6
---------------------------------------------gtttggttggcactcatctttt-tgtttattaattttgagacacttccttatttcttgcttttgttacagACTGGAAAAGCTTTTACTGCAAAGGGAATGCAAGTGCTGGAGCTTGTTGGTAAGGAGACCATGGACTTACTGATCACAGAGACTGGTATTGAAATTGAGA
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gtgctaatgcatcttctctattagaggtttggaaaatttgtcattctttgattgatattcattatcaataattacagatatacatgcatatttct-tctattcattgtgctgcagACAGGAAAAGCTTTTACTGCAAAGGGAATGCAAGTTCTTGAATATGTTGGTAAGGAGACAATGGACTTATTAATCAGTGAAACTGGAATTGAGGTTGAGA
upper sequence: Vv03s0063g01360.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT2G15860.2 (Arabidopsis thaliana), 3'ss of exon 5
gtttg-gttggcactcatctttttgtttattaattttgagacacttc-cttatttcttgcttttg--ttacagACTGGAAAAGCTTTTACTGCAAAGGGAATGCAAGTGCTGGAGCTTGTTGGTAAGGAGACCATGGACTTACTGATCACAGAGACTGGTATTGAAATTGAGA
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gtttgtgctgtttgtgttgtcttctgtctttcatagcttaacatttcatttatcccatacttctgatcttcagACAGGAAAAGCATTAACTGCGAAAGGAATGCAAGTACTTGAATTTGTGGGCAAGGAAACTATGGATTTACTGATTACAGAGACTGGTATTGGAGCTGAGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110414982|gb|EC980849.1|EC980849EST: ACCAAGGTGGTCTTCCTGCAGCTGGTTCTGTTGCACCATCCTTAATAGAG ACTGGAAAAGCTTTTACTGCAAAGGGAATGCAAGTGCTGGAGCTTGTTGGT
genomic: ACCAAGGTGGTCTTCCTGCAGCTGGTTCTGTTGCACCATCCTTAATAGAGgtttggttgg ... tttgttacagACTGGAAAAGCTTTTACTGCAAAGGGAATGCAAGTGCTGGAGCTTGTTGGT
EST:
gi|110698440|gb|EE075938.1|EE075938EST: ACCAAGGTGGTCTTCCTGCAGCTGGTTCTGTTGCACCATCCTTAATAGAG ACTGGAAAAGCTTTTACTGCAAAGGGAATGCAAGTGCTGGAGCTTGTTGGT
genomic: ACCAAGGTGGTCTTCCTGCAGCTGGTTCTGTTGCACCATCCTTAATAGAGgtttggttgg ... tttgttacagACTGGAAAAGCTTTTACTGCAAAGGGAATGCAAGTGCTGGAGCTTGTTGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catctttttgtttattaattttgagacacttccttatttcttgcttttgttacagACTGGAAAAGCTTTTACTGCAAAGGGAATGCAAGTGCTGGAGCTTGTTGGTAAGGAGACCATGGACTTACTGATCACAGAGACTGGTATTGAAATTGAGA
tattaat putative branch site (score: 2)
cttccttatttcttgc putative PPT
ttttgtttattaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttggttggcactcatctttttgtttattaattttgagacacttccttatttcttgcttttgttacagACTGGAAAAGCTTTTACTGCAAAGGGAATGCAAGTGCTGGAGCTTGTTGGTAAGGAGACCATGGACTTACTGATCACAGAGACTGGTATTGAAATTGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA