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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcctttactcattcaatcagcaaaaatgaggccatatgcttaatttctaaatatgacaaaccatttactaagttccttttatttaatcatttatgtattgattgtttttttacagGACATAATCAAAGCTCTTCCCAAGAGTTTAAAGATTGTTGACCTTTCTGCA

Basic information

species Vitis vinifera
transcript Vv03s0063g01110.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110729272|gb|EE105384.1|EE105384
EST:     TTTCTAATGTGGATGCTGTGTTTTGTTGTTTGCCACATGGAACCACACAG                         GACATAATCAAAGCTCTTCCCAAGAGTTTAAAGATTGTTGACCTTTCTGCA
genomic: TTTCTAATGTGGATGCTGTGTTTTGTTGTTTGCCACATGGAACCACACAGgtcctttact ... ttttttacagGACATAATCAAAGCTCTTCCCAAGAGTTTAAAGATTGTTGACCTTTCTGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatttactaagttccttttatttaatcatttatgtattgattgtttttttacagGACATAATCAAAGCTCTTCCCAAGAGTTTAAAGATTGTTGACCTTTCTGCA
                                   tattgat  putative branch site (score: 3)
                                         ttgttttttt  CT-rich tract
                ttttatttaatcattt  TA-rich tract