1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acagagctcaatttcattccttgaatatagttgtgttttaaaaggtagcagtgaaggaaaagagactgatcaccctttttctttgttttgttttgggcagATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTCTGCTTGAGAAGAACACTAACAGGCCCTTGGTAGAGTAAATTAAATAATCTGTGGAGCTAAT
species | Vitis vinifera |
transcript | Vv03s0063g00310.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCGGATATGGAAGTCCAGAAAAATCAG ATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTGTGCTTGAGAAGAEST: gi|18459306|gb|BM437584.1|BM437584
genomic: GCGGATATGGAAGTCCAGAAAAATCAGgtacaagccc ... ttttgggcagATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTCTGCTTGAGAAGA
EST: GCGGATATGGAAGTCCAGAAAAATCAG ATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTGTGCTTGAGAAGAEST: gi|352781564|gb|FQ468408.1|FQ468408
genomic: GCGGATATGGAAGTCCAGAAAAATCAGgtacaagccc ... ttttgggcagATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTCTGCTTGAGAAGA
EST: GCGGATATGGAAGTCCAGAAAAATCAG ATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTCTGCTTGAGAAGAEST: gi|71882440|gb|DT031495.1|DT031495
genomic: GCGGATATGGAAGTCCAGAAAAATCAGgtacaagccc ... ttttgggcagATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTCTGCTTGAGAAGA
EST: GCGGATATGGAAGTCCAGAAAAATCAG ATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTGTGCTTGAGAAGAEST: gi|110372729|gb|EC936916.1|EC936916
genomic: GCGGATATGGAAGTCCAGAAAAATCAGgtacaagccc ... ttttgggcagATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTCTGCTTGAGAAGA
EST: GCGGATATGGAAGTCCAGAAAAATCAG ATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTGTGCTTGAGAAGAEST: gi|110362700|gb|EC926250.1|EC926250
genomic: GCGGATATGGAAGTCCAGAAAAATCAGgtacaagccc ... ttttgggcagATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTCTGCTTGAGAAGA
EST: GCGGATATGGAAGTCCAGAAAAATCAG ATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTGTGCTTGAGAAGAEST: gi|71883659|gb|DT032714.1|DT032714
genomic: GCGGATATGGAAGTCCAGAAAAATCAGgtacaagccc ... ttttgggcagATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTCTGCTTGAGAAGA
EST: GCGGATATGGAAGTCCAGAAAAATCAG ATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTGTGCTTGAGAAGAEST: gi|71886572|gb|DT035627.1|DT035627
genomic: GCGGATATGGAAGTCCAGAAAAATCAGgtacaagccc ... ttttgggcagATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTCTGCTTGAGAAGA
EST: GCGGATATGGAAGTCCAGAAAAATCAG ATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTGTGCTTG
genomic: GCGGATATGGAAGTCCAGAAAAATCAGgtacaagccc ... ttttgggcagATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTCTGCTTG
tagcagtgaaggaaaagagactgatcaccctttttctttgttttgttttgggcagATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTCTGCTTGAGAAGAACACTAACAGGCCCTTGGTAGAGTAAATTAAATAATCTGTGGAGCTAAT
gactgat putative branch site (score: 3)
tcaccctttttctttg CT-rich tract
tttttctttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acagagctcaatttcattccttgaatatagttgtgttttaaaaggtagcagtgaaggaaaagagactgatcaccctttttctttgttttgttttgggcagATCTTGGAGACAATTCGGCAAAGGGGAGGTAAAAGACTCTGCTTGAGAAGAACACTAACAGGCCCTTGGTAGAGTAAATTAAATAATCTGTGGAGCTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - -tcattcc
- - - - - - - - - - - - - - - - - - - -aaaaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaag