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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagggaacctaaaaatcagtaaatccatgcaaacatgctagtttttcatgattctcctgtttgttctaatttctaactgtcatttgcttttatgtcaacagGTGTTTCCTGCTTGTGCAGCCAATTTTCCAACCATCGGAATGTCATCAGAAATGACTAACCCTTCATATCTTCACTATGATCCAATACAACAAGTGGCTA

Basic information

species Vitis vinifera
transcript Vv03s0038g04760.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110360400|gb|EC923471.1|EC923471
EST:     CTGTGAACCCCAGACTTGACTTCAACATCGACAACTTCCTAGCAAAAGAG                         GTGTTTCCTGCTTGTGCAGCCAATTTTCCAACCATCGGAATGTCTTCAGAA
genomic: CTGTGAATCCCAGACTTGACTTCAACATCGACAACTTCCTAGCAAAAGAGgtgagggaac ... atgtcaacagGTGTTTCCTGCTTGTGCAGCCAATTTTCCAACCATCGGAATGTCATCAGAA
EST: gi|33408116|gb|CF213743.1|CF213743
EST:     CTGTGAACCCCAGACTTGACTTCAACATCGACAACTTCCTAGCAAAAGAG                         GTGTTTCCTGCTTGTGCAGCCAATTTTCCAACCATCGGAATGTCTTCAGAA
genomic: CTGTGAATCCCAGACTTGACTTCAACATCGACAACTTCCTAGCAAAAGAGgtgagggaac ... atgtcaacagGTGTTTCCTGCTTGTGCAGCCAATTTTCCAACCATCGGAATGTCATCAGAA
EST: gi|110357551|gb|EC921175.1|EC921175
EST:     CTGTGAACCCCAGACTTGACTTCAACATCGACAACTTCCTAGCAAAAGAG                         GTGTTTCCTGCTTGTGCAGCCAATTTTCCAACCATCGGAATGTCTTCAGAA
genomic: CTGTGAATCCCAGACTTGACTTCAACATCGACAACTTCCTAGCAAAAGAGgtgagggaac ... atgtcaacagGTGTTTCCTGCTTGTGCAGCCAATTTTCCAACCATCGGAATGTCATCAGAA
EST: gi|110416436|gb|EC982418.1|EC982418
EST:     CTGTGAATCCCAGACTTGACTTCAACATCGACAACTTCCTTGCAAAAGAG                         GTGTTTCCTGCTTGTGCAGCCAATTTTCCAACCATCGGAATGTCATCAGAA
genomic: CTGTGAATCCCAGACTTGACTTCAACATCGACAACTTCCTAGCAAAAGAGgtgagggaac ... atgtcaacagGTGTTTCCTGCTTGTGCAGCCAATTTTCCAACCATCGGAATGTCATCAGAA
EST: gi|110358413|gb|EC922605.1|EC922605
EST:     CTGTGAACCCCAGACTTGACTTCAACATCGACAACTTCCTAGCAAAAGAG                         GTGTTTCCTGCTTGTGCAGCCAATTTTCCAACCATCGGAATGTCTTCAGAA
genomic: CTGTGAATCCCAGACTTGACTTCAACATCGACAACTTCCTAGCAAAAGAGgtgagggaac ... atgtcaacagGTGTTTCCTGCTTGTGCAGCCAATTTTCCAACCATCGGAATGTCATCAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgattctcctgtttgttctaatttctaactgtcatttgcttttatgtcaacagGTGTTTCCTGCTTGTGCAGCCAATTTTCCAACCATCGGAATGTCATCAGAAATGACTAACCCTTCATATCTTCACTATGATCCAATACAACAAGTGGCTA
                        ttctaac  putative branch site (score: 1)
                                        cttttat  putative PPT
                    taatttctaa  TA-rich tract