1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tggcaattattgcttcaagcaacaaaaggtcaattaatattttcattttgggttactgataaaaaaatatatatattttcattttgggttgttactgtagGTTCGGGAGCTGGTTCTTTCACGAGATCTTAATCTTATCATTGAACCTGGGAGATCACTTATTGCTAACACTTGCTGCCTAGTTAATCGGGTCACTGGAG
species | Vitis vinifera |
transcript | Vv03s0038g04490.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTATCATGCTGGTGCTGTCCTTCCCACTCCAAGAGATCTTATAGATACA GTTCGGGAGCTGGTTCTTTCACGAGATCTTAATCTTATCATTGAACCTGGGEST: gi|71867276|gb|DT016331.1|DT016331
genomic: ACTATCATGCTGGTGCTGTCCTTCCCACTCCAAGAGATCTTATAGATACAgtgaggatca ... gttactgtagGTTCGGGAGCTGGTTCTTTCACGAGATCTTAATCTTATCATTGAACCTGGG
EST: CTCC-AGAGATCTTATAGATACA GTTCGGGAGCTGGTTCTTTCACGAGATCTTAATCTTATCATTGAACCTGGGEST: gi|30256339|gb|CB972182.1|CB972182
genomic: CTCCAAGAGATCTTATAGATACAgtgaggatca ... gttactgtagGTTCGGGAGCTGGTTCTTTCACGAGATCTTAATCTTATCATTGAACCTGGG
EST: ACTATCATGCTGGTGCTGTCCTTCCCACTCCAAGAGATCTTATAGATACA GTTCGGGAGCTGGTTCTTTCACGAGATCTTAATCTTATCATTGAACCTGGGEST: gi|110373051|gb|EC937258.1|EC937258
genomic: ACTATCATGCTGGTGCTGTCCTTCCCACTCCAAGAGATCTTATAGATACAgtgaggatca ... gttactgtagGTTCGGGAGCTGGTTCTTTCACGAGATCTTAATCTTATCATTGAACCTGGG
EST: ACTATCATGCTGGTGCTGTCCTCCCCACTCCAAGAGATCTTATAGATACA GTTCGGGAGCTGGTTCTTTCACGAGATCTTAATCTTATCATTGAACCTGGG
genomic: ACTATCATGCTGGTGCTGTCCTTCCCACTCCAAGAGATCTTATAGATACAgtgaggatca ... gttactgtagGTTCGGGAGCTGGTTCTTTCACGAGATCTTAATCTTATCATTGAACCTGGG
ttttgggttactgataaaaaaatatatatattttcattttgggttgttactgtagGTTCGGGAGCTGGTTCTTTCACGAGATCTTAATCTTATCATTGAACCTGGGAGATCACTTATTGCTAACACTTGCTGCCTAGTTAATCGGGTCACTGGAG
tactgat putative branch site (score: 2)
ataaaaaaatatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggcaattattgcttcaagcaacaaaaggtcaattaatattttcattttgggttactgataaaaaaatatatatattttcattttgggttgttactgtagGTTCGGGAGCTGGTTCTTTCACGAGATCTTAATCTTATCATTGAACCTGGGAGATCACTTATTGCTAACACTTGCTGCCTAGTTAATCGGGTCACTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - tgcttca
- - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - - - -ttttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa