1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttttgaacaacattataatcatgaagagtatatggaatgcatcttgtttttcaatttcagttttatttggtagctattcattgctcaattgccattacagAATGGGAAAGCATGTCTGGGTGATATCATCTATCGCTACATCACTGCTGAACAGTTCTCCCCAGAATGTCTCCTTGATTGCCTGGACCTATCATCAGAAC
species | Vitis vinifera |
transcript | Vv03s0038g03620.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCTTGCTGAAATGGAGATACCCACTGCCTACTTGGAGACCTTGCCTAAG AATGGGAAAGCATGTCTGGGTGATATCATCTATCGCTACATCACTGCTGAAEST: gi|161708667|gb|FC059196.1|FC059196
genomic: TGCTTGCTGAAATGGAGATACCCACTGCCTACTTGGAGACCTTGCCTAAGgtatgagttt ... gccattacagAATGGGAAAGCATGTCTGGGTGATATCATCTATCGCTACATCACTGCTGAA
EST: TGCTTGCTGAAATGGAGATACCCACTGCCTACTTGGAGACCTTGCCTAAG AATGGGAAAGCATGTCTGGGTGATATCATCTATCGCTACATCACTGCTGAAEST: gi|161708961|gb|FC060504.1|FC060504
genomic: TGCTTGCTGAAATGGAGATACCCACTGCCTACTTGGAGACCTTGCCTAAGgtatgagttt ... gccattacagAATGGGAAAGCATGTCTGGGTGATATCATCTATCGCTACATCACTGCTGAA
EST: TGCTTGCTGAAATGGAGATACCCACTGCCTACTTGGAGACCTTGCCTAAG AATGGGAAAGCATGTCTGGGTGATATCATCTATCGCTACATCACTGCTGAAEST: gi|33401747|gb|CF207374.1|CF207374
genomic: TGCTTGCTGAAATGGAGATACCCACTGCCTACTTGGAGACCTTGCCTAAGgtatgagttt ... gccattacagAATGGGAAAGCATGTCTGGGTGATATCATCTATCGCTACATCACTGCTGAA
EST: TGCTTGCTGAAATGGAGATACCCACTGCCTACTTGGAGACCTTGCCTAAG AATGGGAAAGCATGTCTGGGTGATATCATCTATCGCTACATCACTGCTGAA
genomic: TGCTTGCTGAAATGGAGATACCCACTGCCTACTTGGAGACCTTGCCTAAGgtatgagttt ... gccattacagAATGGGAAAGCATGTCTGGGTGATATCATCTATCGCTACATCACTGCTGAA
gtttttcaatttcagttttatttggtagctattcattgctcaattgccattacagAATGGGAAAGCATGTCTGGGTGATATCATCTATCGCTACATCACTGCTGAACAGTTCTCCCCAGAATGTCTCCTTGATTGCCTGGACCTATCATCAGAAC
aatttcagttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgaacaacattataatcatgaagagtatatggaatgcatcttgtttttcaatttcagttttatttggtagctattcattgctcaattgccattacagAATGGGAAAGCATGTCTGGGTGATATCATCTATCGCTACATCACTGCTGAACAGTTCTCCCCAGAATGTCTCCTTGATTGCCTGGACCTATCATCAGAAC
- - gaacaac
- - - - - - - - - -catgaag
- - - - - - - - - - - - - - - - - gaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattgct