Sequence
atgc intronic sequence ATGC exonic sequence...tagtaaggactattatttccttgttttggattgcatgatcaatctttctgtatcttttggacttgtactttctgtaattgctataatctgtatattgtagGAAGGGTCACCCCTGAAAGTGTTATTTACAGCTTTGGTACTGTCCTTTTGGATCTGCTAAGTGGAAAGCATATCCCGCCAAGTCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g03270.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G48030.1 (Glycine max), 3'ss of exon 2
tagtaaggactattatttccttgttttggattgcatgatcaatctttctgtatcttttggacttgtactttctgtaattgctataatctgtatattgtagGAAGGGTCACCCCTGAAAGTGTTATTTACAGCTTTGGTACTGTCCTTTTGGATCTGCTAAGTGGAAAGCATATCCCGCCAAGTCAT
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--------gtaactaactcccttctcgacatt-------tactttttatatataatataataactcgtttctctcaatcggaatgcttt---tgttacagGAAGGGTCACGCCTGAAAGTGTCATTTACAGCTTTGGAACCGTTCTTCTAGACCTCCTCAGTGGCAAGCACATCCCTCCCAGTCAT
upper sequence: Vv03s0038g03270.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA14G00540.1 (Glycine max), 3'ss of exon 2
tagtaaggactattatttccttgttttggattgcatgatcaatctttctgtatcttttggacttgtactttctgtaattgctataatctgtatattgtagGAAGGGTCACCCCTGAAAGTGTTATTTACAGCTTTGGTACTGTCCTTTTGGATCTGCTAAGTGGAAAGCATATCCCGCCAAGTCAT
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--------gtaaccaactcccttctcgacattttcttttacttttttatgtat-------aacgataattctctcaatcagatt--tcttttttttccagGAAGGGTCACGCCTGAAAGTGTCATTTACAGCTTTGGAACCGTTCTTCTAGACCTCCTCAGTGGCAAGCACATCCCTCCCAGTCAA
upper sequence: Vv03s0038g03270.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G35230.1 (Arabidopsis thaliana), 3'ss of exon 4
-------------------tagtaaggactattatttccttgttttggattgcatgatcaatctttctgtat------cttttggacttgtactttctgtaattgctataatctgtatattgtagGAAGGGTCACCCCTGAAAGTGTTATTTACAGCTTTGGTACTGTCCTTTTGGATCTGCTAAGTGGAAAGCATATCCCGCCAAGTCAT
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gtaaagcaacttgtttatactctatagattattatacaatcaacataaaactcaaatttatagtttttgcactgaaacttcttgaagcaaagatggatctcagtgtgataaattttgtgttgcagGAAGAGTGACACCTGAAAGTGTTACGTATAGCTTTGGAACTGTCCTTCTGGATTTGCTTAGCGGAAAACACATCCCTCCAAGCCAT
upper sequence: Vv03s0038g03270.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S178_86V6.1 (Physcomitrella patens), 3'ss of exon 5
--------------------------------------------------------------------------------tagtaaggactattatttccttgttttggattgc--atgatcaatctttctgtatcttttggacttgtacttt------ctgtaattgctataatctgtatattgtagGAAGGGTCACCCCTGAAAGTGTTATTTACAGCTTTGGTACTGTCCTTTTGGATCTGCTAAGTGGAAAGCATATCCCGCCAAGTCAT
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gtaccaacttggcatacacccccccatgagtacttaagaactggtaacgaagtctgaagcttggtaatgtatttgcgcaattctggacattattacggacctacccaaaattaccaacattcaaagcagccctggatttagtatgcttactttggattcctgagattcttgtattc--aaatttgcagGTAGGGTGACACCTGAAAGTGTTATTTACAGCTATGGAACTGTTCTACTAGATCTGTTGAGTGGGAAGCATCTACCTCCTAGTCAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctgtatcttttggacttgtactttctgtaattgctataatctgtatattgtagGAAGGGTCACCCCTGAAAGTGTTATTTACAGCTTTGGTACTGTCCTTTTGGATCTGCTAAGTGGAAAGCATATCCCGCCAAGTCAT
tataatctgtatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagtaaggactattatttccttgttttggattgcatgatcaatctttctgtatcttttggacttgtactttctgtaattgctataatctgtatattgtagGAAGGGTCACCCCTGAAAGTGTTATTTACAGCTTTGGTACTGTCCTTTTGGATCTGCTAAGTGGAAAGCATATCCCGCCAAGTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - ttccttg
- - - - - - - - - - - - - tggattg
- - - - - - - - - - - - - - - - -catgatc
- - - - - - - - - - - - - - - - - - - - - -ctttctg