Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcaggtacaaacagttgaaacttagtttcatgatcatatatctttttgtgtatccatatctgatgcattttttttttcatccattctgggctctaactctcattcaaatgagGTTCAGATGATAGTGGAAGAGATGAACATCTTGACTACTGTCTTTCTAAGGGGCGACAACCAGAAGATCGTGTTCCCAAACAGCACTCTTGCTACAAGGC

Basic information

species Vitis vinifera
transcript Vv03s0038g02980.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g02980.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G53470.1 (Arabidopsis thaliana), 3'ss of exon 3
gttcaggtacaaacagttgaaacttagtttcatgatcatatatctttttgtgtatccatatctgatgcattttttttttcatccattctgggctctaactctc-attcaaatgagGTTCAGATGATAGTGGAAGAGATGAACATCTTGACTACTGTCTTTCTAAGGGGCGACAACCAGAAGATCGTGTTCCCAAACAGCACTCTTGCTACAAGGC------
                          ||||     |   |  ||| ||| ||| |   || | |  |  | |   |    |   |      |  ||||  |||  ||    | | ||  ||||||| ||||||||||||||||| |||||||||||||||||  |    || || |||||||| || |  ||||||||   ||| |  ||||  |      
--------------------------gtttgtcccttgaaactctgtttctgtttttttacccgtcgt-tatgcatcaaaacttaaagaaagagctaatcctctgttttttttatgtatagATGATTGTGGAAGAGATGAACATTTTGACTACTGTCTTTCTTCGATTTGATAATCAGAAGATTGTATATCCAAACAGTCTTCTCGGAACAAAACCTATCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctgatgcattttttttttcatccattctgggctctaactctcattcaaatgagGTTCAGATGATAGTGGAAGAGATGAACATCTTGACTACTGTCTTTCTAAGGGGCGACAACCAGAAGATCGTGTTCCCAAACAGCACTCTTGCTACAAGGC
                                 ctctaac  putative branch site (score: 2)
                                       ctctcattc  CT-rich tract
         attttttttttcat  TA-rich tract