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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaccaccctttttcattattaccttcattgcttgtggttatgtttacagtttatacgttgtgcgtttcaaagctaactacaagaataaagatatgctcggctttactttttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGTCGTATTGGATCTGCGTATGCTAGAATGATG

Basic information

species Vitis vinifera
transcript Vv03s0038g02510.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349815926|gb|FQ403543.1|FQ403543
EST:     GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|349816941|gb|FQ405067.1|FQ405067
EST:     GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|349814439|gb|FQ398879.1|FQ398879
EST:     GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|294964277|gb|GW838080.1|GW838080
EST:     GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAA
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAA
EST: gi|110373782|gb|EC938130.1|EC938130
EST:     GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|349822402|gb|FQ412666.1|FQ412666
EST:     GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|30326719|gb|CD009981.1|CD009981
EST:     GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|110427704|gb|EC994154.1|EC994154
EST:     GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|71867913|gb|DT016968.1|DT016968
EST:     GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|110372385|gb|EC936546.1|EC936546
EST:     GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|71862449|gb|DT011504.1|DT011504
EST:     GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAG
EST: gi|349818788|gb|FQ409322.1|FQ409322
EST:     GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGCGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|351017651|gb|FQ436004.1|FQ436004
EST:     GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|351015327|gb|FQ445611.1|FQ445611
EST:     GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|349817336|gb|FQ405340.1|FQ405340
EST:     GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|26266758|gb|CA817821.1|CA817821
EST:     GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|349812344|gb|FQ406365.1|FQ406365
EST:     GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|349811070|gb|FQ406058.1|FQ406058
EST:     GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|349817177|gb|FQ405182.1|FQ405182
EST:     GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGAATGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|77582892|gb|DV220428.1|DV220428
EST:     GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|30295744|gb|CB972538.1|CB972538
EST:     GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTNGNTNTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|349811261|gb|FQ406249.1|FQ406249
EST:     GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|349808457|gb|FQ405601.1|FQ405601
EST:     GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|349819566|gb|FQ413450.1|FQ413450
EST:     GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|349822836|gb|FQ398223.1|FQ398223
EST:     GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|77581720|gb|DV219804.1|DV219804
EST:     GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|110376509|gb|EC941574.1|EC941574
EST:     GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|349810282|gb|FQ401728.1|FQ401728
EST:     GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|32271798|gb|CD720957.1|CD720957
EST:     GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|26267099|gb|CA818162.1|CA818162
EST:     GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|29785291|gb|CB342154.2|CB342154
EST:     GCAGACGAGTTCATGAGGGCAGGCTTATACGACGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|349824738|gb|FQ414596.1|FQ414596
EST:     GCAGATGAGTTCATGGGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|351028778|gb|FQ433208.1|FQ433208
EST:     GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|32269541|gb|CD718700.1|CD718700
EST:     GCAGACGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
EST: gi|349820992|gb|FQ404245.1|FQ404245
EST:     GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCT                         GTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG
genomic: GCAGATGAGTTCATGAGGGCAGGCTTATACGATGGATGGCTTCCTCATCTgtacaaccac ... tttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcaaagctaactacaagaataaagatatgctcggctttactttttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGTCGTATTGGATCTGCGTATGCTAGAATGATG
       agctaac  putative branch site (score: 2)
                                     ctttactttttctcat  putative PPT
                 aagaataaagatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacaaccaccctttttcattattaccttcattgcttgtggttatgtttacagtttatacgttgtgcgtttcaaagctaactacaagaataaagatatgctcggctttactttttctcatagGTTTGTGGGGAATTTGCTCAGAGGACAGACTGTTGGTGTGATTGGAGCAGGTCGTATTGGATCTGCGTATGCTAGAATGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG