1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacttttagaccattcttctcaacaatttcttatgtttcttgaatgtttagaaatctcatactattgaaggaggcagattttattattaatatgctggtaatgaccttgttatttcaatgcagGGGAGAAGGGCAAAGGTGCCAGTGGAAAAAAGCTTCATTATAAGGGGACACCATTTCATCGTATAATATCCGGATTCATGATCCAGGGTGGAGATACTGT
species | Vitis vinifera |
transcript | Vv03s0038g02200.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAAACTTCCGGGCTTTGTGCACAG GGGAGAAGGGCAAAGGTGCCAGTGGAAAAAAGCTTCATTATAAGGGGACACEST: gi|351021974|gb|FQ437761.1|FQ437761
genomic: GAAAACTTCCGGGCTTTGTGCACAGgtacttttag ... ttcaatgcagGGGAGAAGGGCAAAGGTGCCAGTGGAAAAAAGCTTCATTATAAGGGGACAC
EST: GAAAACTTCCGGGCTTTGTGCACAG GGGAGAAGGGCAAAGGTGCCAGTGGAAAAAAGCTTCATTATAAGGGGACACEST: gi|110380524|gb|EC945796.1|EC945796
genomic: GAAAACTTCCGGGCTTTGTGCACAGgtacttttag ... ttcaatgcagGGGAGAAGGGCAAAGGTGCCAGTGGAAAAAAGCTTCATTATAAGGGGACAC
EST: GAAAACTTCCGGGCTTTGTGCACAG GGGAGAAGGGCAAAGGTGCCAGTGGAAAAAAGCTTCATTATAAGGGGACAC
genomic: GAAAACTTCCGGGCTTTGTGCACAGgtacttttag ... ttcaatgcagGGGAGAAGGGCAAAGGTGCCAGTGGAAAAAAGCTTCATTATAAGGGGACAC
aggaggcagattttattattaatatgctggtaatgaccttgttatttcaatgcagGGGAGAAGGGCAAAGGTGCCAGTGGAAAAAAGCTTCATTATAAGGGGACACCATTTCATCGTATAATATCCGGATTCATGATCCAGGGTGGAGATACTGT
tattaat putative branch site (score: 2)
ttatttc putative PPT
agattttattattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttttagaccattcttctcaacaatttcttatgtttcttgaatgtttagaaatctcatactattgaaggaggcagattttattattaatatgctggtaatgaccttgttatttcaatgcagGGGAGAAGGGCAAAGGTGCCAGTGGAAAAAAGCTTCATTATAAGGGGACACCATTTCATCGTATAATATCCGGATTCATGATCCAGGGTGGAGATACTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT