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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttcaagttcatgctactggttgtgatttaattttcttttctttttaatctttattgattttgttttctttatgttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG

Basic information

species Vitis vinifera
transcript Vv03s0038g00750.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110687487|gb|EE064951.1|EE064951
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
EST: gi|30126806|gb|CB912145.1|CB912145
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
EST: gi|110698550|gb|EE076176.1|EE076176
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
EST: gi|26262376|gb|CA813439.1|CA813439
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
EST: gi|26262164|gb|CA813227.1|CA813227
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
EST: gi|71856948|gb|DT006003.1|DT006003
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
EST: gi|110724233|gb|EE099882.1|EE099882
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
EST: gi|110723124|gb|EE100074.1|EE100074
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
EST: gi|294966730|gb|GW837749.1|GW837749
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
EST: gi|71868328|gb|DT017383.1|DT017383
EST:     CCACAGATAGAAAGTGGTGGTAAAA                         TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
genomic: CCACAGATAGAAAGTGGTGGTAAAAgtaagtcttc ... gttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattttcttttctttttaatctttattgattttgttttctttatgttgtttcagTTATAATGCCTCCCTCAGCCCTTGACCGCCTAG
                        tattgat  putative branch site (score: 3)
                                              ttgtttc  putative PPT
        ttttctttttaatctt  TA-rich tract