1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aggaagagtgtgagaaagaaaaagatcttaacccatttctagacctcccaatattaccatacaaagtgaaattataatggaagtctggtgttttttgcagGGTGAGTTTATACCCTTTAAGCCTTATAGTCATCGATATCATGTTCCCTACAGAGCATCAGATAGTACCGCTCCCTTCTGGTACTCTATCAAGAGGGCTT
species | Vitis vinifera |
transcript | Vv03s0038g00230.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
tcccaatattaccatacaaagtgaaattataatggaagtctggtgttttttgcagGGTGAGTTTATACCCTTTAAGCCTTATAGTCATCGATATCATGTTCCCTACAGAGCATCAGATAGTACCGCTCCCTTCTGGTACTCTATCAAGAGGGCTT
tgtttttt CT-rich tract
aaagtgaaattataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggaagagtgtgagaaagaaaaagatcttaacccatttctagacctcccaatattaccatacaaagtgaaattataatggaagtctggtgttttttgcagGGTGAGTTTATACCCTTTAAGCCTTATAGTCATCGATATCATGTTCCCTACAGAGCATCAGATAGTACCGCTCCCTTCTGGTACTCTATCAAGAGGGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
aggaaga
- - - - - - - -aagaaaa
- - - - - - - - - - - - - - taaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctggtg