Sequence
atgc intronic sequence ATGC exonic sequencegtaattacattgttggttgtgaggtttagactgtgcagattgtaatttgttgaagtgggttttgtagTTTAATAAGGATTCGGGTCATATTGTTGAGGAATGCAAGTTGAAAGTGGTTTATGTTTCTCCCCCTCAACCACCATCACCAGTTCCTGAAGGATCAGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0154g00500.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA17G15010.1 (Glycine max), 3'ss of exon 4
--------------------gtaattacattgttggttgtgaggtttagactgtgc-agattgtaa---tttgttg---aagtgg----gttttgtagTTTAATAAGGATTCGGGTCATATTGTTGAGGAATGCAAGTTGAAAGTGGTTTATGTTTCTCCCCCTCAACCACCATCACCAGTTCCTGAAGGATCAGAAG
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gtatatgtgttgtgctacttgcttttgcgttttcatttgatttgtgtttgttgtatgaaattataaagatttgttgtgcaattggtattgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTGTATGTTTCTCCACCTCAACCACCGTCTCCAGTCCCAGAAGGTTCGGAGG
upper sequence: Vv02s0154g00500.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G04580.1 (Glycine max), 3'ss of exon 4
--------------------gtaattacattgttggttgtgaggtttagactgtgc-agattgta--atttgttg---aagtggg----ttttgtagTTTAATAAGGATTCGGGTCATATTGTTGAGGAATGCAAGTTGAAAGTGGTTTATGTTTCTCCCCCTCAACCACCATCACCAGTTCCTGAAGGATCAGAAG
| || | || | ||| | || ||| | ||| || |||||||| || |||| || | ||||| || ||||| | || ||| | |||||||| ||||| |||| |||| | ||||||||||| ||||||||||| || || || || ||||| || || |
gtatatgtgttgtgctagttgcttttgcgttttcatttgatttctgtatgttgtatgaaattataagatttgttgtgcaattgggattgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTGTATGTTTCTCCACCTCAACCACCGTCTCCTGTCCCAGAAGGTTCTGAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggttgtgaggtttagactgtgcagattgtaatttgttgaagtgggttttgtagTTTAATAAGGATTCGGGTCATATTGTTGAGGAATGCAAGTTGAAAGTGGTTTATGTTTCTCCCCCTCAACCACCATCACCAGTTCCTGAAGGATCAGAAG
attgtaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattacattgttggttgtgaggtttagactgtgcagattgtaatttgttgaagtgggttttgtagTTTAATAAGGATTCGGGTCATATTGTTGAGGAATGCAAGTTGAAAGTGGTTTATGTTTCTCCCCCTCAACCACCATCACCAGTTCCTGAAGGATCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG