Sequence
atgc intronic sequence ATGC exonic sequencegtaactagtttgtttgcttggctgtagtaaggttccctttctttcttccgtggttcatacaactgaactctacttgtgcaaattgcagGCGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA09G41380.1 (Glycine max), 3'ss of exon 4
gtaactagtttgtttgcttggctgtagtaaggttccctttctttcttccgtggttcatacaactgaactctacttgtgcaaattgcagGCGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGC
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gta-tgaattggctatttttgttgtcttgataattcctaaat-------atgttgaaaatcattgcccttta-ttgtgtgagtt-cagGAGGTGGGTTTAATAATGTTCTAGTTATTGGGGCGGATGCTCTTTCACGATATGTTGATTGGACAGACAGAGGGACCTGTATTCTTTTTGGGGATGCTGC
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G00550.1 (Glycine max), 3'ss of exon 3
gta-actagtttgtttgcttggctgtagtaaggttccctttctttcttccgtggttcatacaactgaactctacttgtgcaaattgcagGCGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGC
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gtatgaaagcttataatttttatttttatttacttaatacttgctaaat-atgatgaaaaccgttgcccttta-ttgtgtgagt-gcagGGGGTGGTTTTAATAATGTTCTAGTCATTGGAGCCGATGCTATTTCACGATATGTTGATTGGACAGATAGAGGCTCCTGTATTCTTTTTGGGGATGCTGC
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G44350.1 (Glycine max), 3'ss of exon 4
gtaactagtttgtttgcttggctgtagtaaggttccctttctttcttccgtggttcatacaactgaactctacttgtgcaaattgcagGCGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGC-
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--tatgaattggttatttttgtcagcttgatagttcctaaat-------atggggaaaatcattgcccttta-ttgtgtgaat-gcaggAGGTGGATTTAATAATGTTCTAGTTATTGGGGCGGATGCTCTCTCACGATATGTTGATTGGACAGACAGAGGGACCTGTATTCTTTTTGGGGATGCTGCT
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G62640.2 (Arabidopsis thaliana), 3'ss of exon 5
gtaactagtttgtttgcttggctgtagtaaggttccctttctttcttccgtggttcatacaactgaactctacttgtgcaaattgcagGCGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGC
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gtaaa-agtcaaataa---gattcaaattcgaataagtaatgaataagttaagtgtatagttcttgtccctttctgttt---tttcagGAGGCGGTTTTAAGAACGTTTTAGTGATCGGAGCTGATTCTTTGTCTCGGTTTGTTGATTGGACGGATAGAGGGACTTGCATTCTATTTGGAGATGCTGC
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S11_305V6.1 (Physcomitrella patens), 3'ss of exon 6
-gtaactagtttgtttgcttg-gctgt--agtaaggttccctttctttcttccgtggttca-----tacaactgaactctacttgtgcaaat---tgcagGCGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGC
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tgttatatttttgtcttcctaagcaatcgaattgagttctttcaacttggtaaaccaatcgaaagttgtctcctaaagctaaatttgaaggtgtgtgcagGAGGTGGTTACGAAAATGTTCTTGTGGTTGGTTCTGATGCTCTTTCAAGATACGTGGATTGGACGGATAGAGGAACGTGTATCCTATTTGGTGATGCTTC
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S119_22V6.2 (Physcomitrella patens), 3'ss of exon 6
--gtaactagtttgtttgcttggctgtagtaaggttccctttctttcttccgtggttcatacaa------ctg---aactctacttgtgcaaat---tgcagGCGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGC
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gggaaactaagtccactgaaagg-tgcacttaa-ttcatcctatctacttagagaatcacatgatgttggctgtctaaaactaacttcgaaagtgtgtgcagGAGGAGGTTACAAGAATGTACTTGTGGTGGGTGCGGATGCTCTATCGCGATACGTGGATTGGACTGACAGAGGGACATGTATTCTGTTTGGCGATGCCTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110394481|gb|EC959504.1|EC959504EST: ATGTAGCGGATTTGTGTTGGGTCTAGTCTCAGCTGCTTGTCATATTAGGG GCGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCT
genomic: ATGTAGCGGATTTGTGTTGGGTCTAGTCTCAGCTGCTTGTCATATTAGGGgtaactagtt ... caaattgcagGCGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tccctttctttcttccgtggttcatacaactgaactctacttgtgcaaattgcagGCGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGC
aaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaactagtttgtttgcttggctgtagtaaggttccctttctttcttccgtggttcatacaactgaactctacttgtgcaaattgcagGCGGTGGGTTTCATAATGTTCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC