1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaaattaaaacactggtttttcacttctctgaatgtctttatcaaaagcaattctgatgaaaatgaatggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCACATCCCGGGTGTATCCAACCAAGGCGATCTATGGAGCAGCTCAGCTCT
species | Vitis vinifera |
transcript | Vv02s0154g00090.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCEST: gi|30255723|gb|CB971855.1|CB971855
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCEST: gi|161715618|gb|FC066788.1|FC066788
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCEST: gi|110689614|gb|EE065992.1|EE065992
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCEST: gi|30255793|gb|CB971925.1|CB971925
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCEST: gi|30324497|gb|CD007759.1|CD007759
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCEST: gi|110361722|gb|EC925216.1|EC925216
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCEST: gi|30252990|gb|CB970541.1|CB970541
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCEST: gi|110370244|gb|EC929199.1|EC929199
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: AGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCEST: gi|45770886|gb|CN006738.1|CN006738
genomic: AGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCEST: gi|30253308|gb|CB970859.1|CB970859
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCEST: gi|30252906|gb|CB970457.1|CB970457
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG ATCGATCATTCCATAATEST: gi|32249394|gb|CD715213.1|CD715213
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAAT
EST: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCEST: gi|34361915|gb|CF403500.1|CF403500
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCEST: gi|30251564|gb|CB969297.1|CB969297
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCEST: gi|110707731|gb|EE084468.1|EE084468
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCEST: gi|110375911|gb|EC940940.1|EC940940
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: GGAGAAAAGTTATCCATGAGGATACTG GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCEST: gi|30253230|gb|CB970781.1|CB970781
genomic: GGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCEST: gi|34361714|gb|CF403299.1|CF403299
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
EST: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTG GTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
genomic: GGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGgtaaaattaa ... ggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATC
cttctctgaatgtctttatcaaaagcaattctgatgaaaatgaatggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCACATCCCGGGTGTATCCAACCAAGGCGATCTATGGAGCAGCTCAGCTCT
ttctgat putative branch site (score: 3)
tttatcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaattaaaacactggtttttcacttctctgaatgtctttatcaaaagcaattctgatgaaaatgaatggtggcgcagGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCACATCCCGGGTGTATCCAACCAAGGCGATCTATGGAGCAGCTCAGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC