1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcttcgattgtttgacagtattgttttttgtaactcttgacatgattaatttatctcttaaatttgctgttaagttaacctattgttccaatacattcagGCTCCACTTTTGAAGAAGTATCCAGCCAGCCTTTCAGTCACAGCATATTCATACTTTTTTGGTGCTTTATTTATGGTAGTGACAGCATTCGTTATGACTA
species | Vitis vinifera |
transcript | Vv02s0087g00880.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAAACTGTTTGTGCATGGCAGCTTATTTAGCCATTCAG GCTCCACTTTTGAAGAAGTATCCAGCCAGCCTTTCAGTCACAGCATATTCAEST: gi|30133139|gb|CB918478.1|CB918478
genomic: GGAAACTGTTTGTGCATGGCAGCTTATTTAGCCATTCAGgtactagatt ... atacattcagGCTCCACTTTTGAAGAAGTATCCAGCCAGCCTTTCAGTCACAGCATATTCA
EST: GGAAACTGTTTGTGCATGGCAGCTTATTTAGCCATTCAG GCTCCACTTTTGAAGAAGTATCCAGCCAGCCTTTCAGTCACAGCATATTCAEST: gi|45771714|gb|CN007566.1|CN007566
genomic: GGAAACTGTTTGTGCATGGCAGCTTATTTAGCCATTCAGgtactagatt ... atacattcagGCTCCACTTTTGAAGAAGTATCCAGCCAGCCTTTCAGTCACAGCATATTCA
EST: AACTG-TTGTGCATGGCAGC-TATTTA-CCATTCAG GCTCCAC-TTTGAAGAAGTATCCAGCCAGCCTTTCAGTCACAGCATATTCA
genomic: AACTGTTTGTGCATGGCAGCTTATTTAGCCATTCAGgtactagatt ... atacattcagGCTCCACTTTTGAAGAAGTATCCAGCCAGCCTTTCAGTCACAGCATATTCA
ttaatttatctcttaaatttgctgttaagttaacctattgttccaatacattcagGCTCCACTTTTGAAGAAGTATCCAGCCAGCCTTTCAGTCACAGCATATTCATACTTTTTTGGTGCTTTATTTATGGTAGTGACAGCATTCGTTATGACTA
agttaac putative branch site (score: 3)
ttatctcttaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttcgattgtttgacagtattgttttttgtaactcttgacatgattaatttatctcttaaatttgctgttaagttaacctattgttccaatacattcagGCTCCACTTTTGAAGAAGTATCCAGCCAGCCTTTCAGTCACAGCATATTCATACTTTTTTGGTGCTTTATTTATGGTAGTGACAGCATTCGTTATGACTA
- - - - - - - - - - - - - - - - - - - - catgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctattg