Sequence
atgc intronic sequence ATGC exonic sequence...ttgttataaaaaattatttgcaaaggacattgctatttactcctctatttgcttcaactaattcgactaaggatgtccgtttgttatgttgctggaatagAACCCGCTTCCATATTTGGCGCGTTTTCCTGGAGCAGATGTCTTAACTTCAAGTGATCAAGTTGTACCAACAGTTGTTGATGATCGCTTGGATATTTGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G08350.2 (Glycine max), 3'ss of exon 3
------ttgttataaaaaattatttgcaaaggacattgctatttactcctctatttgcttcaactaattcgactaaggatgtccgtttgttatgttgctggaatagAACCCGCTTCCATATTTGGCGCGTTTTCCTGGAGCAGATGTCTTAACTTCAAGTGATCAAGTTGTACCAACAGTTGTTGATGATCGCTTGGATATTTGGC
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ttaaattcattatgcactatcatcttttacaatgtctcgaaaccaataatctgattgttatatgttattc--ctaat--tattgaataaata-attgtta-aacagAACCCGCTTCCGTATCTTGCTCGTTATCCAGAAGCAGATGTTTTAACTTCAAGTGATCAAGTTATACCAACAGTTGTTGATGATAGTTTGGAAAATTGGC
upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G20730.1 (Glycine max), 3'ss of exon 4
--ttgttataaaaaattatttgcaaaggacattgctatttactcctctatttgcttcaactaattcgactaaggatgtccgtttgttatgttgctggaatagAACCCGCTTCCATATTTGGCGCGTTTTCCTGGAGCAGATGTCTTAACTTCAAGTGATCAAGTTGTACCAACAGTTGTTGATGATCGCTTGGATATTTGGC
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aatcatcttttattctcatcttttacaatgtctccaagccgataatctgattgtat--gttattcctattacatatcattgaataatgtaattgttaaacagAACCCACTTCCGTATCTTGCTCGTTATCCAGAAGCAGATGTTTTAACTTCAAGTGATCAAGTTATACCAACGGTTGTTGATGATAGTTTGGAAAATTGGC
upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G09650.1 (Glycine max), 3'ss of exon 2
---ttgttataaaaaattatttgcaaaggacattgc-tatttactcctctatttgcttcaactaattcg-actaaggatgtccgtttgttatgttgctggaatagAACCCGCTTCCATATTTGGCGCGTTTTCCTGGAGCAGATGTCTTAACTTCAAGTGATCAAGTTGTACCAACAGTTGTTGATGATCGCTTGGATATTTGGC
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tactcatctttaagga--aatcgccaagcatattatatgattgttcttctga--gatatattttattcataaaacttatatgcaattgtgtgattg-tggagcagAACCCACTTCCATATCTTGCTCGTTATCCCGAAGCAGATGTTTTAACATCCAGTGATCAAGTTGTTCCAACAGTGGTTGATGATAGTCTGGAAATTTGGC
upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G35690.1 (Glycine max), 3'ss of exon 4
---ttgttataaaaaattatttgcaaaggacattgc-tatttactcctctatttgcttcaactaattcg-actaaggatgtccgtttgttatgttgctggaatagAACCCGCTTCCATATTTGGCGCGTTTTCCTGGAGCAGATGTCTTAACTTCAAGTGATCAAGTTGTACCAACAGTTGTTGATGATCGCTTGGATATTTGGC
| | | || | | | || ||| | ||| | || || ||| | | | | |||| | | || | | || | ||| |||| ||||||| ||||||||| | || ||| ||| ||||||||| ||||| || |||||||||||||| |||||||| ||||||||| | |||| |||||||
tgctcatctttaagga--aatcgccaagcatattatgtgattgttcttctga--gatatattttattcataaaacttatatgcaattatgtgattg-tggagcagAACCCACTTCCATATCTTGCTAGTTATCCCAAAGCAGATGTTTTAACATCCAGTGATCAAGTTGTTCCAACAGTGGTTGATGATAGTCTGGAAATTTGGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatttgcttcaactaattcgactaaggatgtccgtttgttatgttgctggaatagAACCCGCTTCCATATTTGGCGCGTTTTCCTGGAGCAGATGTCTTAACTTCAAGTGATCAAGTTGTACCAACAGTTGTTGATGATCGCTTGGATATTTGGC
aactaat putative branch site (score: 2)
aactaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgttataaaaaattatttgcaaaggacattgctatttactcctctatttgcttcaactaattcgactaaggatgtccgtttgttatgttgctggaatagAACCCGCTTCCATATTTGGCGCGTTTTCCTGGAGCAGATGTCTTAACTTCAAGTGATCAAGTTGTACCAACAGTTGTTGATGATCGCTTGGATATTTGGC
- - - -aaaaaat
- - - - - - - - - - caaagga
- - - - - - - - - - - - - -cattgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaat