Sequence
atgc intronic sequence ATGC exonic sequence...ttttttcatttgtacacttattcgatataattgttctccttcatatgaattttgttcttaatcaatttagtcactttggactaattctttggtttaacagATGTTATATATGCCTTGTGGAGTATGAGGAAGGAGACAACATGCGGGTGTTACCTTGCCATCATGAATTTCATAGGACATGTGTAGACAAGTGGCTAAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0087g00420.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G17110.1 (Glycine max), 3'ss of exon 4
-ttttttcatttgtacacttattcgatataattgttctccttcatatgaattttgttcttaatcaatttagtcactttgg----actaattctttggtttaacagATGTTATATATGCCTTGTGGAGTATGAGGAAGGAGACAACATGCGGGTGTTACCTTGCCATCATGAATTTCATAGGACATGTGTAGACAAGTGGCTAAAA
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tttgtgttacttgt-tatctcttttaca-gtttgtgcgtgtgtattt---cttagtatagaggtattttgcttattttaattttgctaatccctaattttcacagATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAACATGCGAGTACTACCGTGCCATCATGAATTTCATAGAACATGTATAGACAAGTGGCTGAAG
upper sequence: Vv02s0087g00420.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA16G08260.1 (Glycine max), 3'ss of exon 7
ttttttcatttgtacacttattcgatataattgttctccttcatatgaattttgttcttaat-------caatttagtcactttgg----actaattctttggtttaacagATGTTATATATGCCTTGTGGAGTATGAGGAAGGAGACAACATGCGGGTGTTACCTTGCCATCATGAATTTCATAGGACATGTGTAGACAAGTGGCTAAAA
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--------tttgtg---ttacttgttatcacttttacagtttttgcgagtgtatttcatagtatagaggtattttacttcttttaatgttgctaatcccttattttcacagATGTTATATATGCCTTGTTGAGTATGAGGATGGAGACAACATGCGAGTACTACCGTGCCATCATGAATTTCATAGAACATGTATAGACAAGTGGCTGAAG
upper sequence: Vv02s0087g00420.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G35490.1 (Glycine max), 3'ss of exon 4
ttttttcatttgtacacttat--tcgatataattgttctccttcatatgaattttgttcttaatcaat-ttagtcactttggactaattctttggtttaacagATGTTATATATGCCTTGTGGAGTATGAGGAAGGAGACAACATGCGGGTGTTACCTTGCCATCATGAATTTCATAGGACATGTGTAGACAAGTGGCTAAAA
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--tttgcactaccaaactaaaaactagtttaggcatt-tctctagcatggaatgcactaacagtttttatttttttttctttgctaatcctttgatatcacagATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGAGTTCTGCCTTGTCATCATGAATTTCATACAACATGTGTAGACAAGTGGCTGAAG
upper sequence: Vv02s0087g00420.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA09G35060.1 (Glycine max), 3'ss of exon 6
ttttttcatttgtacacttattcgatataattgttctccttcatatgaatt--ttgttcttaatcaatttagtcactttgg--actaattctttggtttaacagATGTTATATATGCCTTGTGGAGTATGAGGAAGGAGACAACATGCGGGTGTTACCTTGCCATCATGAATTTCATAGGACATGTGTAGACAAGTGGCTAAAA
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---aataaactaaaaactagtttag-gcatttctctagcatggaatgtaccaacagttttttttttctttttttctttccattgctaatcctttaatatcgaagATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGAGTTCTGCCTTGTCATCATGAATTTCATACAACATGTGTAGACAAGTGGCTGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaattttgttcttaatcaatttagtcactttggactaattctttggtttaacagATGTTATATATGCCTTGTGGAGTATGAGGAAGGAGACAACATGCGGGTGTTACCTTGCCATCATGAATTTCATAGGACATGTGTAGACAAGTGGCTAAAA
gactaat putative branch site (score: 2)
ttctttg CT-rich tract
ttcttaatcaattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttttcatttgtacacttattcgatataattgttctccttcatatgaattttgttcttaatcaatttagtcactttggactaattctttggtttaacagATGTTATATATGCCTTGTGGAGTATGAGGAAGGAGACAACATGCGGGTGTTACCTTGCCATCATGAATTTCATAGGACATGTGTAGACAAGTGGCTAAAA
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