1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagccctgattcatactattgtttcttcacggagttgatcatatgaaccaattcgataacctattaatctatttgatgtttattctggaagctttgatttatgaccatcacctttgtatatgttcccaaaaattgtgtcacttagtctgtgtaattgctttatttctagGTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCTTTGGCTCCAAGAGATAATCATGAGGCTCAAGTCCAATTTGCATTGGAAC
species | Vitis vinifera |
transcript | Vv02s0033g01120.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGGTGTGGG GTTGCNAGCTGGGGAAGTGATTTNAT-AGATCGTGGCATACTAACAATGTEST: gi|30299339|gb|CB976133.1|CB976133
genomic: AGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGG-TGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTT-ATTAGATCGTGGCATACTAACAATGT
EST: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG GTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCTEST: gi|110712840|gb|EE088240.1|EE088240
genomic: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
EST: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG GTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCTEST: gi|110712136|gb|EE089409.1|EE089409
genomic: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
EST: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG GTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCTEST: gi|219555224|gb|FG984925.1|FG984925
genomic: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
EST: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG GTTGTGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCTEST: gi|110720926|gb|EE097340.1|EE097340
genomic: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
EST: CA-AAATGCTANATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG GTTGCGAACTGGGGAAGTGATTTAEST: gi|110724515|gb|EE100409.1|EE100409
genomic: -AGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTA
EST: CA-AAATGCTANATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG GTTGCGAACTGGGGAAGTGATTTAEST: gi|219555419|gb|FG985032.1|FG985032
genomic: -AGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTA
EST: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG GTTGTGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCTEST: gi|110724258|gb|EE099928.1|EE099928
genomic: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
EST: AGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGGTGTGGG GGTGCGAGCTGGGGEST: gi|219555469|gb|FG984556.1|FG984556
genomic: AGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGG-TGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGG
EST: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG GTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCTEST: gi|219555415|gb|FG985028.1|FG985028
genomic: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
EST: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG GTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCTEST: gi|110685058|gb|EE063045.1|EE063045
genomic: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
EST: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGC GTTGCCAGCCTGGGAAG-TGATTTATTAGATCGTGGCATAATAACA-TGGTEST: gi|110723381|gb|EE100627.1|EE100627
genomic: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGC-TGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATG-T
EST: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG GTTGCAAGCTGGGGAAGTGATTTATT
genomic: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTATT
tgtatatgttcccaaaaattgtgtcacttagtctgtgtaattgctttatttctagGTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCTTTGGCTCCAAGAGATAATCATGAGGCTCAAGTCCAATTTGCATTGGAAC
ctttatttct CT-rich tract
taattgctttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagccctgattcatactattgtttcttcacggagttgatcatatgaaccaattcgataacctattaatctatttgatgtttattctggaagctttgatttatgaccatcacctttgtatatgttcccaaaaattgtgtcacttagtctgtgtaattgctttatttctagGTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCTTTGGCTCCAAGAGATAATCATGAGGCTCAAGTCCAATTTGCATTGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA