Sequence
atgc intronic sequence ATGC exonic sequencegtaagtgctctgacacctttgtctaattttacatgcaggatgcagcttaaggtttttggtttttgattgtcatttttctttctttctatcagTTGACAAGTTGATGAAAGGAAAGGCCAATACTGCACATTGTCTCCGATTTCCAGGTGATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G38410.1 (Glycine max), 3'ss of exon 1
gtaagtgctctgacacctttgtctaattttacatgcagg-atgcagcttaaggtttttggtttttgattgtcatttttctttctttctatcagTTGACAAGTTGATGAAAGGAAAGGCCAATACTGCACATTGTCTCCGATTTCCAGGTGATTG
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gtaagtgctttgatg---ttgcaacattctgtaagtttttaggaaacacaaaactaacaattatgggt-gaaattgttta--------accagTTGACAAATTGACAAAAGGAAAGGCCAACACTGCACATTGTGTGCGTTTCCCTGGTGATTG
upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA11G02850.1 (Glycine max), 3'ss of exon 5
gtaagtgctctgacacctttgtctaattttacatgcagg-atgcagcttaaggtttttggtttttgattgtcatttttctttctttctatcagTTGACAAGTTGATGAAAGGAAAGGCCAATACTGCACATTGTCTCCGATTTCCAGGTGATTG
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gtaagtgatttgatg---ttgcaacattctgtaagtttttaggaaacacaaaactaacaattatgggt-gaaattgttta--------accagTTGACAAATTGACAAAAGGAAAGGCCAACACTGCACATTGTGTGCATTTCCCTGGTGATTG
upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA09G09670.1 (Glycine max), 3'ss of exon 5
gtaagtgctctgacacctttgtctaattttacatgcagg-atgcagcttaaggtttttggtttttgattgtcatttttctttctttctatcagTTGACAAGTTGATGAAAGGAAAGGCCAATACTGCACATTGTCTCCGATTTCCAGGTGATTG
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gtaagtgctttgatg---ttgcaacattctgtaagtttttaggaaacacaaaactaaccgttatgggt-gaaattgttta--------actagTTGACAAATTGACAAAAGGAAAGGCCAACACTGCACATTGTGTGCGTTTCCCTGGTGATTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggatgcagcttaaggtttttggtttttgattgtcatttttctttctttctatcagTTGACAAGTTGATGAAAGGAAAGGCCAATACTGCACATTGTCTCCGATTTCCAGGTGATTG
ttttgat putative branch site (score: 4)
tttttgattgtcattt CT-rich tract
atttttctttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtgctctgacacctttgtctaattttacatgcaggatgcagcttaaggtttttggtttttgattgtcatttttctttctttctatcagTTGACAAGTTGATGAAAGGAAAGGCCAATACTGCACATTGTCTCCGATTTCCAGGTGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA