Sequence
atgc intronic sequence ATGC exonic sequencegttagggttatcttagatgcatgtgatctatcttctattgagaccactgtatttggatcagttttgtcacagtctgatattttttcagcttgtccttttccaatcctcccttctccagcaagtgatatttgtggttattatattaaagattttgctgatcacgcgcagTTTTACACATATGAAAGCTTGAAGCAATTGATGTTGCCATCACTGCAGCCTAATGCCAAACCCAACACATTACAGACG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g03490.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G01790.1 (Glycine max), 3'ss of exon 10
gttagggttatcttagatgcatgtgatctatcttctattgagaccactgtatttggatcagttttgtcacagtctgatattttttcagcttgtccttttccaat-cctccct----tctccagcaagtgatatttgtggttattatattaaagattttgctgatcacgcgcagTTTTACACATATGAAAGCTTGAAGCAATTGATGTTGCCATCACTGCAGCCTAATGCCAAACCCAACACATTACAGACG
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------------------------------------------------------------------cccctgt-taatattacttagactagtcttctatgattgcctttctaagttcttcagaaactaaggttt-----tatt-tattgctggttgttgtgaccaactgtagTTTTACACATATGAAAGCTTGAAGCAAGTGATG---CCATC---------TAGTATTCAACCCAACTCGTTTAAGACT
upper sequence: Vv02s0025g03490.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G37810.1 (Glycine max), 3'ss of exon 5
gttagggttatcttagatgcatgtgatctatcttctattgagaccactgtatttggatcagttttgtcacagtctgatattttttcagcttgtccttttccaatcctcccttctccagcaagtgatatttgtggttattatattaaagattttgctgatcacgcgcagTTTTACACATATGAAAGCTTGAAGCAATTGATGTTGCCATCACTGCAGCCTAATGCCAAACCCAACACATTACAGACG
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-------------------------------------------------------------atccccctctgt-taatattacttggtcttctatgattgcctttctaagttcttcagaaactaaggttt-tatttattgcttt-----tttttgtgaccaactgtagTTTTACACATATGAAAGCTTGAAGCAAGTGATG---CCATC---------TAGTATTCAACCCAACACATTTCAGACT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tccagcaagtgatatttgtggttattatattaaagattttgctgatcacgcgcagTTTTACACATATGAAAGCTTGAAGCAATTGATGTTGCCATCACTGCAGCCTAATGCCAAACCCAACACATTACAGACG
tgctgat putative branch site (score: 3)
atatttgtggttatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagggttatcttagatgcatgtgatctatcttctattgagaccactgtatttggatcagttttgtcacagtctgatattttttcagcttgtccttttccaatcctcccttctccagcaagtgatatttgtggttattatattaaagattttgctgatcacgcgcagTTTTACACATATGAAAGCTTGAAGCAATTGATGTTGCCATCACTGCAGCCTAATGCCAAACCCAACACATTACAGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG