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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagataaagtcatatgcttttgcttctttcttcattactagtcaatcatagttcttgatcccattcttttaatcagGATGAGCTTCTCTGGGGGGCATCATGGATTCACAGGGCGTCAAATAACGCCTCATATCTGGCTTACATCCAGTCAAATGGCCAAACAATGGGCGCGGACG

Basic information

species Vitis vinifera
transcript Vv02s0025g02650.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720276|gb|FC070537.1|FC070537
EST:     CTCTCAGCTCGGTGGTCTGCCCATTCTACTGCTCCTACTCTGGATATCAT                         GATGAGCTTCTCTGGGGGGCATCATGGATTCACAGGGCGTCAAATAACGCC
genomic: CTCTCAGCTCGGTGGTCTGCCCATTCTACTGCTCCTACTCTGGATATCATgtaagataaa ... ttttaatcagGATGAGCTTCTCTGGGGGGCATCATGGATTCACAGGGCGTCAAATAACGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttctttcttcattactagtcaatcatagttcttgatcccattcttttaatcagGATGAGCTTCTCTGGGGGGCATCATGGATTCACAGGGCGTCAAATAACGCCTCATATCTGGCTTACATCCAGTCAAATGGCCAAACAATGGGCGCGGACG
                               tcttgat  putative branch site (score: 4)
                                     tcccattctttt  CT-rich tract
                                         attcttttaat  TA-rich tract