1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaattctgtgattatttcattcttcctctgcctttttctttctttccaacttgggtttgatatcgtatttgtggattaattcacatgaacctcttggctttgcagGCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGCTGCCAATGCCAAATCTGTTAGGGAGTTTGATGATGGATTAACTCGAG
species | Vitis vinifera |
transcript | Vv02s0025g02550.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAA GCATATACTCATTTTTGGAGATATAGGAGGTGAATTTAATATTCCATTGGCEST: gi|110388876|gb|EC953674.1|EC953674
genomic: ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAAgtaattctgt ... ggctttgcagGCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGC
EST: AAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAA GCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGCEST: gi|110373722|gb|EC938021.1|EC938021
genomic: AAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAAgtaattctgt ... ggctttgcagGCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGC
EST: ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAA GCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGCEST: gi|110372983|gb|EC937181.1|EC937181
genomic: ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAAgtaattctgt ... ggctttgcagGCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGC
EST: ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAA GCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGCEST: gi|28961880|gb|CB340949.1|CB340949
genomic: ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAAgtaattctgt ... ggctttgcagGCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGC
EST: ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAA GCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGCEST: gi|349825263|gb|FQ417984.1|FQ417984
genomic: ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAAgtaattctgt ... ggctttgcagGCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGC
EST: ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAA GCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGC
genomic: ATTGTTTATGACAAAACTCTTGCAAATGCTCTCCGCAAAATTTTCAAGAAgtaattctgt ... ggctttgcagGCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGC
ttgggtttgatatcgtatttgtggattaattcacatgaacctcttggctttgcagGCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGCTGCCAATGCCAAATCTGTTAGGGAGTTTGATGATGGATTAACTCGAG
gattaat putative branch site (score: 3)
cctcttg putative PPT
attaattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattctgtgattatttcattcttcctctgcctttttctttctttccaacttgggtttgatatcgtatttgtggattaattcacatgaacctcttggctttgcagGCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGCTGCCAATGCCAAATCTGTTAGGGAGTTTGATGATGGATTAACTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA