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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatgcacctgaattttcggttttctaattggatttatgctatgcttgagatcgatcacttgaccatattcttcctctctgattattttattctcccaacttgtatagAGTGCTCGAGACCCTGAAAGATTATGCCATCAAAGCTCTCGTCAATACTGTGGACCACTTGGGGTCTGTAACCTACAAGGTTAACACTTTCTTGGACGAC

Basic information

species Vitis vinifera
transcript Vv02s0025g02020.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161705544|gb|FC057084.1|FC057084
EST:     GCAGCAGAGTATTTTGAACAATGCTACCATAAAGATGACCAGAAACAAAT                         AGTGCTCGAGACCCTGAAAGATTATGCCATCAAAGCTCTCGTCAATACTGT
genomic: GCAGCAGAGTATTTTGAACAATGCTACCATAAAGATGACCAGAAACAAATgtgagatgca ... acttgtatagAGTGCTCGAGACCCTGAAAGATTATGCCATCAAAGCTCTCGTCAATACTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatcacttgaccatattcttcctctctgattattttattctcccaacttgtatagAGTGCTCGAGACCCTGAAAGATTATGCCATCAAAGCTCTCGTCAATACTGTGGACCACTTGGGGTCTGTAACCTACAAGGTTAACACTTTCTTGGACGAC
                       ctctgat  putative branch site (score: 4)
                        tctgattattttatt  TA-rich tract