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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctttgggcaatgaacagaggcaatagtttcggttcaggcatactaaagaaacagattgcacataaaggaatggttagaacctttacaatctgtttcttctttattagcatctgttctaacaactgatgaggttgatcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGGAAAATAGTGTTGCTGAGATACTTCAACCCGGTTGGTGCACATTCTAGTG

Basic information

species Vitis vinifera
transcript Vv02s0025g01580.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g01580.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os08g28730.1 (Oryza sativa), 3'ss of exon 4
gtatgctttgggcaatgaacagaggcaatagtttcggttcaggcatactaaagaaacagattgcacataaaggaatggttagaacctttacaatctgtttcttctttattagcatctgttctaacaactgatgaggttgatcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGGAAAATAGTGTTGCTGAGATACTTCAACCCGGTTGGTGCACATTCTAGTG
                                                    |   |   |  |   |     ||||   | | | | ||| ||   |   ||||  |     ||    |   |||| || | |   ||| |  | ||||||||| |||||||||| ||||||||||| ||| || ||||| |||||||||| ||  |  | || || |||||||| || ||||| || ||| |||| |
------------------------------------------------gtctgtgtcccttcacttttcttttaatgagaaaatcttctaccattcataagttctccaa----attgact---acaattg-taaaaatgaac--tgcagCTTGTTGTTGAAGATATTTGCCGTGATATCTACCGTACAGATCCTGAATGGAAGATTATTCTACTTAGGTACTTCAATCCAGTTGGGGCTCATCCTAGCG

upper sequence: Vv02s0025g01580.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G36850.1 (Glycine max), 3'ss of exon 4
gtatgctttgggcaatgaacagaggcaatagtttcggttcaggcatactaaagaaacagattgcacataaaggaatggttagaacctttacaatctgtttcttctttattagcatctgttctaacaactgatgaggttgatcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGGAAAATAGTGTTGCTGAGATACTTCAACCCGGTTGGTGCACATTCTAGTG
                                                                       |   ||  |   |  || | ||| | |   || || | ||  | |  |  || | | |||     ||  || ||||||||| | || ||||| || || |||||||| ||| || |||||||||| |||||| |  |  || |||||||||||||||| |||||||||||| | ||||
-----------------------------------------------------------------------gttttgcattttaatttcataat-tataatttgttgaatactaacaatgatatctaatgagagtttttctcttttcagCTTATCATCGAAGAAATTTGTCGTGATATCTACCGTGCAGATTCTGATTGGAAAGTTATACTGTTGAGATACTTCAACCCAGTTGGTGCACATCCCAGTG

upper sequence: Vv02s0025g01580.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G23920.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatgctttgggcaatgaacagaggcaatagtttcggttcaggcatactaaagaaacagattgcacataaaggaatggtta-gaacctttacaatctgtttcttctttattagcatctgttctaacaactgatgaggttgatcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGGAAAATAGTGTTGCTGAGATACTTCAACCCGGTTGGTGCACATTCTAGTG
                            |||   |  || || |  | ||  ||  ||       | |     | |||| | |||   | | |||| |    |         | |||||    |   | |  |    |      | | ||||| |||| ||||| || ||||| ||| |  |  |||| || || |||||||| ||  | ||||| |||||||||||||| |||||||||||| ||||||
---------------------------gtagcacc--tttagcctgagtattgacccaagcccaccttgtgatagtggtgatgaatgataataatcaggaaat---------gaatctgactgag--attatttgcttgtgctgtgtaagCTTTTTATCGAAGAGATTTGCCGGGATGTACATCGTTCTGACTCGGAATGGAAGATCATATTGCTTAGATACTTCAACCCTGTTGGTGCACATCCTAGTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110720449|gb|EE096391.1|EE096391
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
EST: gi|110719820|gb|EE095280.1|EE095280
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
EST: gi|110718272|gb|EE094913.1|EE094913
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
EST: gi|110731724|gb|EE106396.1|EE106396
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
EST: gi|110720256|gb|EE096017.1|EE096017
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGGTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
EST: gi|110720916|gb|EE097257.1|EE097257
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
EST: gi|110697145|gb|EE073879.1|EE073879
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
EST: gi|110718494|gb|EE095391.1|EE095391
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
EST: gi|110720332|gb|EE096162.1|EE096162
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
EST: gi|110727068|gb|EE103430.1|EE103430
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGGAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
EST: gi|110728721|gb|EE104535.1|EE104535
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
EST: gi|110732185|gb|EE107249.1|EE107249
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
EST: gi|71860637|gb|DT009692.1|DT009692
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTG
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTG
EST: gi|71883897|gb|DT032952.1|DT032952
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
EST: gi|110727091|gb|EE103475.1|EE103475
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
EST: gi|110385299|gb|EC949809.1|EC949809
EST:     TCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
genomic: TCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
EST: gi|110708350|gb|EE085791.1|EE085791
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
EST: gi|71861707|gb|DT010762.1|DT010762
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGT
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGT
EST: gi|110718330|gb|EE095043.1|EE095043
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
EST: gi|110719030|gb|EE096543.1|EE096543
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
EST: gi|110709164|gb|EE084386.1|EE084386
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGG
EST: gi|30126470|gb|CB911809.1|CB911809
EST:     GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAG                         CTTGTTATTGAAGATATATGCCGTGATATTTAC
genomic: GTACAGAAGAGTTCCCGCTATGTGCTGCAAATCCATATGGACGAACCAAGgtatgctttg ... atcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtttcttctttattagcatctgttctaacaactgatgaggttgatcctttcagCTTGTTATTGAAGATATATGCCGTGATATTTACGGTTCAGATTCTGAATGGAAAATAGTGTTGCTGAGATACTTCAACCCGGTTGGTGCACATTCTAGTG
                                              tcctttc  CT-rich tract
       ttctttatta  TA-rich tract