Sequence
atgc intronic sequence ATGC exonic sequence...tagttagcaaagtactccttccttttcattttgaactttcttgattaggatcctctttattagcatctgttctagcaactgatgaggttgattctttcagCTTTTCATTGAAGATATATGCCGTGATATCCACCGCTCTGATTCTGAATGGAAAATTGTGTTGCTGAGATATTTCAACCCAGTTGGGGCACATCCTAGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01560.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os08g28730.1 (Oryza sativa), 3'ss of exon 4
tagttagcaaagtactccttccttttcattttgaactttcttgattaggatcctctttattag-catctgttctagcaactgatgaggttgat-------tctttcagCTTTTCATTGAAGATATATGCCGTGATATCCACCGCTCTGATTCTGAATGGAAAATTGTGTTGCTGAGATATTTCAACCCAGTTGGGGCACATCCTAGTG
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-------------gtctgtgtcccttcacttt----tcttttaatgagaaaatcttctaccattcataagttctccaaattgactacaattgtaaaaatgaactgcagCTTGTTGTTGAAGATATTTGCCGTGATATCTACCGTACAGATCCTGAATGGAAGATTATTCTACTTAGGTACTTCAATCCAGTTGGGGCTCATCCTAGCG
upper sequence: Vv02s0025g01560.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G36850.1 (Glycine max), 3'ss of exon 4
tagttagcaaagtactccttccttttcattttgaactttcttgattaggatcctctttattagcatctgttctagcaactgatgaggttgattctttcagCTTTTCATTGAAGATATATGCCGTGATATCCACCGCTCTGATTCTGAATGGAAAATTGTGTTGCTGAGATATTTCAACCCAGTTGGGGCACATCCTAGTG
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--------------------gttttgcattttaa--tttcataattataatt-tgttgaatactaacaatgatatctaatgagagtttttctcttttcagCTTATCATCGAAGAAATTTGTCGTGATATCTACCGTGCAGATTCTGATTGGAAAGTTATACTGTTGAGATACTTCAACCCAGTTGGTGCACATCCCAGTG
upper sequence: Vv02s0025g01560.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G23920.1 (Arabidopsis thaliana), 3'ss of exon 4
------tagttagca-aagtactccttccttttcattttg-aactttcttgattaggatcctctttattagcatctgt-tctagc--aactgatgaggttg-attctttcagCTTTTCATTGAAGATATATGCCGTGATATCCACCGCTCTGATTCTGAATGGAAAATTGTGTTGCTGAGATATTTCAACCCAGTTGGGGCACATCCTAGTG
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gtagcacctttagcctgagtattgacccaagcccaccttgtgatagtggtgat--gaatgataataatcaggaaatgaatctgactgagattatttgcttgtgctgtgtaagCTTTTTATCGAAGAGATTTGCCGGGATGTACATCGTTCTGACTCGGAATGGAAGATCATATTGCTTAGATACTTCAACCCTGTTGGTGCACATCCTAGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taggatcctctttattagcatctgttctagcaactgatgaggttgattctttcagCTTTTCATTGAAGATATATGCCGTGATATCCACCGCTCTGATTCTGAATGGAAAATTGTGTTGCTGAGATATTTCAACCCAGTTGGGGCACATCCTAGTG
ttctttc CT-rich tract
tctttatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tagttagcaaagtactccttccttttcattttgaactttcttgattaggatcctctttattagcatctgttctagcaactgatgaggttgattctttcagCTTTTCATTGAAGATATATGCCGTGATATCCACCGCTCTGATTCTGAATGGAAAATTGTGTTGCTGAGATATTTCAACCCAGTTGGGGCACATCCTAGTG
- - - - - - - - ccttcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatga