Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgatttttatttttatttttaaaaaaaattaatttattgattttttaaacatatttaatagttttttgacattgacttttatgatttcctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACCCAGTGGACTCATTTGCAGAGAAGGCAATGGTGGAGATCAAGAGACAGTA

Basic information

species Vitis vinifera
transcript Vv02s0025g00640.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g00640.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os05g45050.2 (Oryza sativa), 3'ss of exon 3
gtaatgatttttatttttatttttaaaaaaaattaatttattgattttttaaacatatttaatagttttttgacattgacttttatgatttcctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACCCAGTGGACTCATTTGCAGAGAAGGCAATGGTGGAGATCAAGAGACAGTA
             |  |||||||   | || |  | | ||    ||     | || |||||  | | ||   |  |  | |||| |   ||| |    |||| ||| |  | ||  ||||||||||||| ||||||||||| |||||||||| | | ||  | |||| ||||||||| ||| | ||  | ||||   | ||
------------gtaattattttggtacaaca--actgtacaagtt-----accacatttagcactgttaccaactacagttttct---ttcttg---cagTCTTTATGGTACTGTACACCGTGCCTGTTCTGTATGAGAAGTATGAGGACCAAATCGATGCTTTTGGAGAGAAGGCCATGATCGAACTGAAGAAGTACTA

upper sequence: Vv02s0025g00640.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G37300.1 (Glycine max), 3'ss of exon 4
gtaatgatttttatttttatt-tttaaaaaaaattaatttattgattttttaaacata--tttaatagttttt-------tgacattgacttttatgatttcctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACCCAGTGGACTCATTTGCAGAGAAGGCAATGGTGGAGATCAAGAGACAGTA
|||||||  | | | |||||  ||| | |   | |  |  ||||| ||| |||   ||  || ||| || | |       || |||  | || | || |||| | |||||| |||||||||||||||||| ||||||||||| |||||||||||||| || |  || ||||| ||||  ||||| ||||| |  ||||| ||||  || ||
gtaatgaagtgtttctttataatttgacatttact--tccattgaatttctaatattaacttgaattgtatatattgcgatgtcatatatttctttgttttcgtgaaacagCTTTTGTTTTGCTTCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCATGTCGACTCTTTTGGTGAGAAAGCAATTGCCGAGATTAAGAAGCAATA

upper sequence: Vv02s0025g00640.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G02250.1 (Glycine max), 3'ss of exon 4
gtaatgatttttatttttatt-tttaaaaaaaattaatttattgatttt----ttaaac---atatttaatagttttttgacattgacttttatgatttcctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACCCAGTGGACTCATTTGCAGAGAAGGCAATGGTGGAGATCAAGAGACAGTA
|||||||  | | | |||||  ||| | |   | |    |   | || |    ||||     || ||  ||| |    ||  ||  | || |||| |||| | |||||| |||||||||||| ||||| ||||||||||| |||||||||||||| || |  || ||||| ||||  | ||||||||| |  ||||| ||||  || ||
gtaatgaagtgtttctttatcatttgacatttactgccatggaggttctaatattaacttgaattttatatactgcgatgtaatgtatttctatgttttcgtgaaacagCTTTTGTTTTGCTGCACACTGTGCCTGTGCTTTATGAGAAATATGAAGATCATGTAGACTCTTTTGGTGGGAAGGCAATTGCCGAGATTAAGAAGCAATA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110731085|gb|EE108905.1|EE108905
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|351056273|gb|FQ453735.1|FQ453735
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|110723518|gb|EE100924.1|EE100924
EST:     GTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGGACCTTGT-CTACATAG                         TTTTTGGTTTGGCTT-ACACCGTGCCTGTGCTGTATGA-AAATATGAGGAC
genomic: GTGTCAATTGTGGGCAGTTGGTGTAACTTCTTG-ACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTG-CTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGAC
EST: gi|349828010|gb|FQ422878.1|FQ422878
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|110371909|gb|EC936044.1|EC936044
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGTTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|110684721|gb|EE062324.1|EE062324
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGATGGA
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTT-GTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGA-GGA
EST: gi|30131910|gb|CB917249.1|CB917249
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|110691625|gb|EE069943.1|EE069943
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|30296703|gb|CB973497.1|CB973497
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|349826619|gb|FQ418710.1|FQ418710
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTCCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|110689474|gb|EE065740.1|EE065740
EST:     GTGTCAAATGTGGGCAGTTGGTGTACCTTCTTGACCTTGGTCTACATAAG                         TTTT-GTTATGCTTCACACCATCCCTGTGCTGTATGAGAAATATGAGGAC
genomic: GTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATA-Ggtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGAC
EST: gi|110372297|gb|EC936450.1|EC936450
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|161707696|gb|FC057423.1|FC057423
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|349828802|gb|FQ419135.1|FQ419135
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTA-ATAG                         G
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacag-
EST: gi|349828802|gb|FQ419135.1|FQ419135
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTA-ATAG                         G
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacag-
EST: gi|349820518|gb|FQ404013.1|FQ404013
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGGATGAGAAA
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAA
EST: gi|110695959|gb|EE074568.1|EE074568
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|110730633|gb|EE107933.1|EE107933
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAA                         TTTTTTGTTTTGCTTTCCCACCGTGCCGGTGCTG
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTT-GTTTTGCTT-CACACCGTGCCTGTGCTG
EST: gi|351023646|gb|FQ448197.1|FQ448197
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|349823560|gb|FQ414970.1|FQ414970
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|110693223|gb|EE069264.1|EE069264
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|351053564|gb|FQ462639.1|FQ462639
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|30253114|gb|CB970665.1|CB970665
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGAGA
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|110712849|gb|EE088256.1|EE088256
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|351016650|gb|FQ424077.1|FQ424077
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|110371532|gb|EC935632.1|EC935632
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|110397930|gb|EC963929.1|EC963929
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGT-CTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|351033859|gb|FQ447897.1|FQ447897
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|110721244|gb|EE098018.1|EE098018
EST:     GTGTCAATTGTGGGCAGTTGGTGGTA-CTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAAAAATATGAGGACC
genomic: GTGTCAATTGTGGGCAGTTGGTG-TAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|110410031|gb|EC975707.1|EC975707
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|110706191|gb|EE081511.1|EE081511
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGT-CTACATAG                         TTTTTGTTTTGCTTCAC-CCGGGCCTGTGCTGGATGAGAAAT-TGGAGGAC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATG-AGGAC
EST: gi|110718326|gb|EE095031.1|EE095031
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGANGGAC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGA-GGAC
EST: gi|34548102|gb|CF516334.1|CF516334
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|349824318|gb|FQ417689.1|FQ417689
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTNTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|33402635|gb|CF208262.1|CF208262
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|110395723|gb|EC961393.1|EC961393
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|110697469|gb|EE074483.1|EE074483
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGANAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|351041683|gb|FQ455893.1|FQ455893
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|110690299|gb|EE067279.1|EE067279
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGNAGAA-TATGAGGAC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATG-AGAAATATGAGGAC
EST: gi|349827000|gb|FQ419091.1|FQ419091
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAAGAA-TATGAGGAC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGA-GAAATATGAGGAC
EST: gi|110387135|gb|EC951780.1|EC951780
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|110692075|gb|EE070905.1|EE070905
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|351033925|gb|FQ462980.1|FQ462980
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|349811034|gb|FQ406022.1|FQ406022
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|351013192|gb|FQ424897.1|FQ424897
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|30296772|gb|CB973566.1|CB973566
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|351026162|gb|FQ428174.1|FQ428174
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|351012766|gb|FQ430329.1|FQ430329
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|110733104|gb|EE109003.1|EE109003
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|30252458|gb|CB970009.1|CB970009
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACC
EST: gi|352798976|gb|FQ480825.1|FQ480825
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGG
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGG
EST: gi|110707907|gb|EE084844.1|EE084844
EST:     GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAG                         TTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAAAAATATGAGGAC
genomic: GGTGTCAATTGTGGGCAGTTGGTGTAACTTCTTGACCTTGTTCTACATAGgtaatgattt ... cctaaaacagTTTTT-GTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaaacatatttaatagttttttgacattgacttttatgatttcctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACCCAGTGGACTCATTTGCAGAGAAGGCAATGGTGGAGATCAAGAGACAGTA
                                            tcctaaa  putative branch site (score: 2)
                                          tttcct  CT-rich tract
        atatttaatagttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatgatttttatttttatttttaaaaaaaattaatttattgattttttaaacatatttaatagttttttgacattgacttttatgatttcctaaaacagTTTTTGTTTTGCTTCACACCGTGCCTGTGCTGTATGAGAAATATGAGGACCCAGTGGACTCATTTGCAGAGAAGGCAATGGTGGAGATCAAGAGACAGTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA