Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgtaacaaattcatggattcttttagtcagttcactgaggctttgtcaattatcctgatgtgacaattattccaagcttcttttccactttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAAGATGAGTTCAACATACAGACAACAAAATGTGACAATTGCATCATT

Basic information

species Vitis vinifera
transcript Vv02s0025g00130.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g00130.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os03g03180.1 (Oryza sativa), 3'ss of exon 4
----gtgtaacaaattcatggattcttttagtcagttcactgaggctttgtcaattatcctgatgtgacaattattccaagcttcttttccacttt-ttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAAGATGAGTTCAACATACAGACAACAAAATGTGACAATTGCATCATT
     |||    |||  |   ||   |  | |    |||||    ||||   |||||| ||  | |     |||    |    |   |   ||||| || || ||||  | || |||||||| ||||| || || |||||||||||  || | |||||||| ||||||||||||||||| ||||| || || |||||||||
atgcttgtcttgaatggagtaatc--tccaatactgtcactattccttt---aattatgctatttttgtgcttaccttagaactaactagtactttatttttcagGTGTTTCTGTGCTTTGGTAATTCAGTTGCTTCAACCCGCTTCTTGCTCCAAGATGAATTCAACATACAGACAACTAAATGCGATAACTGCATCATT

upper sequence: Vv02s0025g00130.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os10g39100.1 (Oryza sativa), 3'ss of exon 4
------------gtgtaacaaattcatggattcttttagtcagttcactga---ggctttgtcaattatcctgatgtgac--aattattccaagcttcttttccactttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAAGATGAGTTCAACATACAGACAACAAAATGTGACAATTGCATCATT
            ||     |    |  |   |   | |||  | | |   |   |   ||| ||  ||   |  |    |  ||    | ||          |    |||  || ||||  ||  ||||||||| || ||||| || |||||| | || ||| ||||||||||||||||||| ||||||||  | || ||||| |||||||||
gtagccatctgcgtactgtagccacccgagctgaatcagttcgatgatctacatgatcttgacatgtaatgtattcaagctgaaccgattcagctgatgaaactgtatttgtttcagGTGTTCTGCTGCTTTGGTAACTCGGTGGCTTCAACCAGGTTCCTGCTGCAAGATGAGTTCAACATTCAGACAACCCAGTGCGACAACTGCATCATT

upper sequence: Vv02s0025g00130.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G060564_T04 (Zea mays), 3'ss of exon 4
gtgtaacaa-attcatggattcttttagtcagttcactgaggc-tttgtcaattatcctgatgtgacaattattccaagcttcttttccactttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAAGATGAGTTCAACATACAGACAACAAAATGTGACAATTGCATCATT----
 ||   ||| ||  ||| |       | |   | ||   |  | | ||    || |     | |  |   ||  | |||  |     |  |||| | || ||||  |||| |||||||| ||||| || ||||||||||||||  || |||||||||| || ||||||||||| ||  | |||||||| |||||||||    
ttggggcaatatggatgcaagtccccatttcttacatgaaaacctctgatgtttttgtctctctatcttctaacctaag--taaggcctgctttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAGATGAATTTAACATACAGACCACTCAGTGTGACAACTGCATCATTGTAA

upper sequence: Vv02s0025g00130.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G060564_T02 (Zea mays), 3'ss of exon 4
gtgtaacaa-attcatggattcttttagtcagttcactgaggctt-tgtcaattatcctgatgtgacaattattccaagcttcttttccactttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAAGATGAGTTCAACATACAGACAACAAAATGTGACAATTGCATCATT
 ||   ||| ||  ||| |       | |   | ||   |  | | ||    || |     | |  |   ||  | |||  |     |  |||| | || ||||  |||| |||||||| ||||| || ||||||||||||||  || |||||||||| || ||||||||||| ||  | |||||||| |||||||||
ttggggcaatatggatgcaagtccccatttcttacatgaaaacctctgatgtttttgtctctctatcttctaacctaag--taaggcctgctttcttttcagGTGTTCCTTTGCTTTGGCAATTCAGTTGCATCAACCCGCTTCTTGCTGCAAGATGAATTTAACATACAGACCACTCAGTGTGACAACTGCATCATT

upper sequence: Vv02s0025g00130.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G065696_T01 (Zea mays), 3'ss of exon 5
gtgtaacaaattcatggattcttttagtcagttcactgaggctttgtcaattatcctgatg--tgacaattattccaagcttcttttccactttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAAGATGAGTTCAACATACAGACAACAAAATGTGACAATTGCATCATT
  || ||   | |  | |  |    |   ||    |    ||||||||  | |  | |||      |||||           |     | ||| |   | ||||  ||  |||||| || || |||||||| |||||||| || ||| |||| || ||||||||||| ||||||||  | || ||||| |||||||| 
--gtgacgcctgcgcg-acacacacacatagccatc---agctttgtctgtcaatcggataatccgcaattcggttgctgaccacgctcccttctctctcagGTGTTCTGCTGCTTCGGCAACTCGGTAGCTTCAACCCGGTTCCTGCTGCAGGACGAGTTCAACATCCAGACAACGCAGTGCGACAACTGCATCATC

upper sequence: Vv02s0025g00130.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G065696_T02 (Zea mays), 3'ss of exon 5
gtgtaacaaattcatggattcttttagtcagttcactgaggctttgtcaattatcctgatg--tgacaattattccaagcttcttttccactttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAAGATGAGTTCAACATACAGACAACAAAATGTGACAATTGCATCATT----
  || ||   | |  | |  |    |   ||    |    ||||||||  | |  | |||      |||||           |     | ||| |   | ||||  ||  |||||| || || |||||||| |||||||| || ||| |||| || ||||||||||| ||||||||  | || ||||| ||||||||     
--gtgacgcctgcgcg-acacacacacatagccatc---agctttgtctgtcaatcggataatccgcaattcggttgctgaccacgctcccttctctctcagGTGTTCTGCTGCTTCGGCAACTCGGTAGCTTCAACCCGGTTCCTGCTGCAGGACGAGTTCAACATCCAGACAACGCAGTGCGACAACTGCATCATCGTGC

upper sequence: Vv02s0025g00130.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G37590.1 (Glycine max), 3'ss of exon 4
---gtgtaacaaattcatggattcttttagtcagttcactgaggctttgtcaattatcctgatgtgacaattattccaagcttcttttccactttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAAGATGAGTTCAACATACAGACAACAAAATGTGACAATTGCATCATT
     | |  |      ||||     ||     | ||    |   | |||   || | |   |   |   ||  |  |   ||| | | |   |||  || ||||| ||||||||||||||||||| || || |||||||||||||| ||||||||||| || ||||| || || ||  ||||||| |||||||| |||
agcacgcaggattcctttggagctggttttctgggtcttgaattttctgtggctttttcaagtagcatgctttattta---ttcctatgcgtctttgtttcagGTTTTCCTCTGCTTTGGAAATTCAGTCGCCTCAACCCGCTTTCTATTGCAAGATGAATTTAACATTCAAACCACGCAATGTGATAATTGCATTATT

upper sequence: Vv02s0025g00130.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G01990.3 (Glycine max), 3'ss of exon 3
gtgtaacaaattcat-ggattctttt--agtcagttcactgaggctttg-tcaattatcctgatgtgacaa--ttattccaagcttcttttccactttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAAGATGAGTTCAACATACAGACAACAAAATGTGACAATTGCATCATT
   |||  |   |   |||||| |||  ||   |||  ||| | |||   |    | |  |  |||  ||   ||  |  |  | | | |  | || |||    ||||| ||||||||||||||||||| || || ||||| |||||||| ||||||||||| || ||||| || || ||  ||||||| |||||||| |||
---taaagagcacgcaggattcctttggagctggttttctgggtcttgaattttctgtggttttgtagcatgctttatttatacctatgtgtcgctgttt---cagGTTTTCCTCTGCTTTGGAAATTCAGTCGCCTCAACTCGCTTTCTATTGCAAGATGAATTTAACATTCAAACTACGCAATGTGATAATTGCATTATT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110715828|gb|EE094325.1|EE094325
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|71876558|gb|DT025613.1|DT025613
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|110719570|gb|EE094813.1|EE094813
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|110718422|gb|EE095239.1|EE095239
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|110718576|gb|EE095569.1|EE095569
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCGACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|110722846|gb|EE099484.1|EE099484
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|71855736|gb|DT004791.1|DT004791
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|30323648|gb|CD006910.1|CD006910
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|77583957|gb|DV221019.1|DV221019
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|110720498|gb|EE096475.1|EE096475
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|110720581|gb|EE096628.1|EE096628
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|22012649|gb|BQ797683.1|BQ797683
EST:     G-GGAAGGTG-GGAG-AAGCCGATGCCCAGAA-TTTGCC-TTGCACTGAG                         GTTCTCCTCTGC-TTGGGAATTCGGTAGCATCAACCCGCTTTCTG-TGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|26261997|gb|CA813060.1|CA813060
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|77583228|gb|DV220653.1|DV220653
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|110717840|gb|EE094048.1|EE094048
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|110709314|gb|EE084676.1|EE084676
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|161713830|gb|FC063465.1|FC063465
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|34546969|gb|CF515201.1|CF515201
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|110706381|gb|EE081855.1|EE081855
EST:     AATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: AATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|156738897|gb|EV243018.1|EV243018
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|37189488|gb|CF608837.1|CF608837
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|32249632|gb|CD715451.1|CD715451
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|110711755|gb|EE088596.1|EE088596
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|110719017|gb|EE096514.1|EE096514
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|110719739|gb|EE095129.1|EE095129
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|30305064|gb|CB981858.1|CB981858
EST:     GGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTTGCCTTTGCCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCA
genomic: GGAAGGTGTGGAGAAAGCCGATGCCCAGAA-TTTTGCCTTTG-CACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCA
EST: gi|161718232|gb|FC066020.1|FC066020
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|71873346|gb|DT022401.1|DT022401
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|30298828|gb|CB975622.1|CB975622
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|28959960|gb|CB339981.1|CB339981
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|349827844|gb|FQ422712.1|FQ422712
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|71855683|gb|DT004738.1|DT004738
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|30305007|gb|CB981801.1|CB981801
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|34547057|gb|CF515289.1|CF515289
EST:     AAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: AAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|110364333|gb|EC923898.1|EC923898
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|30137552|gb|CB922890.1|CB922890
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|110718516|gb|EE095437.1|EE095437
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|71856757|gb|DT005812.1|DT005812
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|110719159|gb|EE096816.1|EE096816
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|110728525|gb|EE104171.1|EE104171
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|71856874|gb|DT005929.1|DT005929
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|110371545|gb|EC935656.1|EC935656
EST:     AAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: AAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|294966746|gb|GW837765.1|GW837765
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|161717044|gb|FC066540.1|FC066540
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
EST: gi|110718395|gb|EE095180.1|EE095180
EST:     GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAG                         GTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA
genomic: GTGGAAGGTGTGGAGAAAGCCGATGCCCAGAATTTTGCCTTTGCACTGAGgtatgaaatt ... ttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcaattatcctgatgtgacaattattccaagcttcttttccactttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAAGATGAGTTCAACATACAGACAACAAAATGTGACAATTGCATCATT
        tcctgat  putative branch site (score: 3)
                                cttcttttccactttt  putative PPT
                                            tttttgttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgtaacaaattcatggattcttttagtcagttcactgaggctttgtcaattatcctgatgtgacaattattccaagcttcttttccactttttgtttagGTTCTCCTCTGCTTTGGAAATTCGGTAGCATCAACCCGCTTTCTGTTGCAAGATGAGTTCAACATACAGACAACAAAATGTGACAATTGCATCATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- gtaacaa
- - - - - ttcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - cctgatg