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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtaccaccaaatttggaatttcagctaattgttctttcattgaacttattttacattggatttaatttaattaatctaatagtagtttacaatttgaaactgcagGGGAATCTTAACTCTAATTCATCCAGGGAACAAATGCTTAAGGCCGTGCAGCAGCACTTCACAGCACAG

Basic information

species Vitis vinifera
transcript Vv02s0025g00080.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110393161|gb|EC958185.1|EC958185
EST:     CAAAACTAGGAACTGATTCATTGTGGAGATATTGCAAAAAATTCAACATT                         GGGAATTTTAACTTTAATTCATCCAGGGAACAAATGCTTAAGGCCGTGCAG
genomic: CAAAACTAGGAACTGATTCATTGTGGAGATATTGCAAAAAATTCAACATTgtgggtacca ... gaaactgcagGGGAATCTTAACTCTAATTCATCCAGGGAACAAATGCTTAAGGCCGTGCAG
EST: gi|110400391|gb|EC966952.1|EC966952
EST:     CAAAACTAGGAACTGATTCATTGTGGAGATATTGCAAAAAATTCAACATT                         GGGAATTTTAACTTTAATTCATCCAGGGAACAAATGCTTAAGGCCGTGCAG
genomic: CAAAACTAGGAACTGATTCATTGTGGAGATATTGCAAAAAATTCAACATTgtgggtacca ... gaaactgcagGGGAATCTTAACTCTAATTCATCCAGGGAACAAATGCTTAAGGCCGTGCAG
EST: gi|110396452|gb|EC962138.1|EC962138
EST:     CAAAACTAGGAACTGATTCATTGTGGAGATATTGCAAAAAATTCAACATT                         GGGAATCTTAACTCTAATTCATCCAGGGAACAAATGCTTAAGGCCGTGCAG
genomic: CAAAACTAGGAACTGATTCATTGTGGAGATATTGCAAAAAATTCAACATTgtgggtacca ... gaaactgcagGGGAATCTTAACTCTAATTCATCCAGGGAACAAATGCTTAAGGCCGTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacattggatttaatttaattaatctaatagtagtttacaatttgaaactgcagGGGAATCTTAACTCTAATTCATCCAGGGAACAAATGCTTAAGGCCGTGCAGCAGCACTTCACAGCACAG
                       atctaat  putative branch site (score: 3)
         atttaatttaattaat  TA-rich tract