Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctatgatgttacagcaacaatgctcattgtggaggatatatttttctttgctgtctgcatgtttgaatgttctgttaatttttttgatttgaatatgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCCATAATGATATAGCCAATGAAATACCGGTTGATGCTCAAAGGTTGCAGTA

Basic information

species Vitis vinifera
transcript Vv02s0012g02790.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351035676|gb|FQ463521.1|FQ463521
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|351046180|gb|FQ442558.1|FQ442558
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|110705231|gb|EE081878.1|EE081878
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|352794074|gb|FQ479316.1|FQ479316
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|26258680|gb|CA809743.1|CA809743
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|351034454|gb|FQ463267.1|FQ463267
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|351034375|gb|FQ463188.1|FQ463188
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|351037902|gb|FQ465140.1|FQ465140
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|110364860|gb|EC928418.1|EC928418
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|110704711|gb|EE081697.1|EE081697
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|351052620|gb|FQ452532.1|FQ452532
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|352790200|gb|FQ481399.1|FQ481399
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|351055369|gb|FQ441967.1|FQ441967
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|37190420|gb|CF609769.1|CF609769
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|351036160|gb|FQ464005.1|FQ464005
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|351016089|gb|FQ432044.1|FQ432044
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|110392190|gb|EC957433.1|EC957433
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|71884210|gb|DT033265.1|DT033265
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|351027248|gb|FQ444497.1|FQ444497
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|351044367|gb|FQ452919.1|FQ452919
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|22010685|gb|BQ795719.1|BQ795719
EST:     AGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: AGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|71874794|gb|DT023849.1|DT023849
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|351033642|gb|FQ462172.1|FQ462172
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|351032807|gb|FQ461696.1|FQ461696
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|352798335|gb|FQ480360.1|FQ480360
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACAGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|351033496|gb|FQ462147.1|FQ462147
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|351039606|gb|FQ461473.1|FQ461473
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|26257869|gb|CA808932.1|CA808932
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|352790134|gb|FQ481333.1|FQ481333
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|110724316|gb|EE100035.1|EE100035
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|351056762|gb|FQ443389.1|FQ443389
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|351025681|gb|FQ426695.1|FQ426695
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|351054105|gb|FQ450187.1|FQ450187
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|351047341|gb|FQ451853.1|FQ451853
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC
EST: gi|351044729|gb|FQ443260.1|FQ443260
EST:     GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA                         AGGGGATCCCAACTGAGGATAAAAACAGGCCTTCGTTCTTTCCTATTATCC
genomic: GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAgtaagctatg ... tgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtctgcatgtttgaatgttctgttaatttttttgatttgaatatgcattccagAGGGGATCCCAACTGAGGATAAAAACTGGCCTTCGTTCTTTCCTATTATCCATAATGATATAGCCAATGAAATACCGGTTGATGCTCAAAGGTTGCAGTA
                   ttctgttaattttttt  TA-rich tract