Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttttgatgctttacatgcttgtcacttgtgagaaaagaatatgggatcttcaatagtctaatggcccaactgaattgttatgcagGTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATTAT

Basic information

species Vitis vinifera
transcript Vv02s0012g02530.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0012g02530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G13260.1 (Glycine max), 3'ss of exon 4
gtaacttttgatgctttacatgcttgtcacttgtgagaaaagaatatgggatcttcaatagtctaatggcccaactgaattg-ttatgcagGTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATTAT
        ||||  | | | |  ||  |  || ||| ||| | | ||  | | |  ||  |||  ||     ||||| |||| |  || ||||||||| |||||||| || ||| ||||||||||||||||||| |||||| | 
-------gtgatattatgcttctttaccctttttgataaatggaaattaggttt--aaacgtccgattttgtaactgtattgatcttgtagGTCTTGACATTACAATTTTGGGTGGCAATGATTTTTATTCATATAGGAATGAG

upper sequence: Vv02s0012g02530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA04G41570.1 (Glycine max), 3'ss of exon 4
gtaacttttgatgctttacatgcttgtcacttgtgagaaaagaatatgggatcttcaatagtctaatggcccaactgaattg-ttatgcagGTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATTAT
        ||||  | | | |         || |  |||  |||||| ||   || |    ||  ||     ||||| |||| |  || ||||||||| |||||||| || ||| |||||||||||||||| || |||||| | 
-------gtgatattatgcttctccaattttt-tatgaatggaatatagg---tttagacttccgattttgtaactggattgatcttgtagGTCTTGACATTACAATTTTGGGTGGCAATGATTTTTATTCGTATAGGAATGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71863651|gb|DT012706.1|DT012706
EST:     AACACTTGACAAGAATAATAATGATTTTTTACACACAAAACTCTTACAAG                         GTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATT
genomic: AACACTTGACAAGAATAATAATGATTTTTTACACACAAAACTCTTACAAGgtaacttttg ... tgttatgcagGTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATT
EST: gi|110707464|gb|EE083889.1|EE083889
EST:     AACACTTGACAAGAATAATAATGATTTTTTACAGACAAAACTCTTACAAG                         GTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATT
genomic: AACACTTGACAAGAATAATAATGATTTTTTACACACAAAACTCTTACAAGgtaacttttg ... tgttatgcagGTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATT
EST: gi|27584900|gb|CB007595.1|CB007595
EST:     AACACTTGACAAGAATAATAATGATTTTTTACAGACAAAACTCTTACAAG                         GTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATT
genomic: AACACTTGACAAGAATAATAATGATTTTTTACACACAAAACTCTTACAAGgtaacttttg ... tgttatgcagGTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATT
EST: gi|294964885|gb|GW838688.1|GW838688
EST:     AACACTTGACAAGAATAATAATGATTTTTTACACACAAAACTCTTACAAG                         GTCTTGATATTACAATCTTAGGTTGCAATGATTTCTATTCATACAGGAATT
genomic: AACACTTGACAAGAATAATAATGATTTTTTACACACAAAACTCTTACAAGgtaacttttg ... tgttatgcagGTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaaagaatatgggatcttcaatagtctaatggcccaactgaattgttatgcagGTCTTGATATTACAATCTTAGGTTGCAATGATTTTTATTCATACAGGAATTAT
                         gtctaat  putative branch site (score: 3)
                                          aattgttat  TA-rich tract