1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaactgggcacatgccctacattatatcatttctaggcattaagaataggttcttctaatatgctctctcccctaaactattagatgatttgtgctgcagACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCATTGAAGAAAGGGAGCAGGGAATACAAGAAATCCAGCACCAAATTGGCGAG
species | Vitis vinifera |
transcript | Vv02s0012g01850.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTCCAGATAAGAGTCCTGAACAGCGTGCTCTTCTTGTGGAATCTAGAAG ACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCATEST: gi|349814672|gb|FQ400310.1|FQ400310
genomic: GGTCCAGATAAGAGTCCTGAACAACGTGCTCTTCTTGTGGAATCTAGAAGgtgaattcat ... tgtgctgcagACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCAT
EST: GGTCCAGATAAGAGTCCTGAACAACGTGCTCTTCTTGTGGAATCTAGAAG ACAGGAGGTTTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCATEST: gi|349807660|gb|FQ402051.1|FQ402051
genomic: GGTCCAGATAAGAGTCCTGAACAACGTGCTCTTCTTGTGGAATCTAGAAGgtgaattcat ... tgtgctgcagACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCAT
EST: GGTCCAGATAAGAGTCCTGAACAGCGTGCTCTTCTTGTGGAATCTAGAAG ACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCATEST: gi|110690731|gb|EE068149.1|EE068149
genomic: GGTCCAGATAAGAGTCCTGAACAACGTGCTCTTCTTGTGGAATCTAGAAGgtgaattcat ... tgtgctgcagACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCAT
EST: GGTCCAGATAAGAGTCCTGAACAGCGTGCTCTTCTTGTGGAATCTAGAAG ACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCATEST: gi|349828272|gb|FQ416225.1|FQ416225
genomic: GGTCCAGATAAGAGTCCTGAACAACGTGCTCTTCTTGTGGAATCTAGAAGgtgaattcat ... tgtgctgcagACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCAT
EST: GGTCCAGATAAGAGTCCTGAACAGCGTGCTCTTCTTGTGGAATCTAGAAG ACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCATEST: gi|349823620|gb|FQ415030.1|FQ415030
genomic: GGTCCAGATAAGAGTCCTGAACAACGTGCTCTTCTTGTGGAATCTAGAAGgtgaattcat ... tgtgctgcagACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCAT
EST: GGTCCAGATAAGAGTCCTGAACAGCGTGCTCTTCTTGTGGAATCTAGAAG ACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCATEST: gi|349821234|gb|FQ404366.1|FQ404366
genomic: GGTCCAGATAAGAGTCCTGAACAACGTGCTCTTCTTGTGGAATCTAGAAGgtgaattcat ... tgtgctgcagACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCAT
EST: GGTCCAGATAAGAGTCCTGAACAGCGTGCTCTTCTTGTGGAATCTAGAAG ACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCATEST: gi|351021992|gb|FQ437779.1|FQ437779
genomic: GGTCCAGATAAGAGTCCTGAACAACGTGCTCTTCTTGTGGAATCTAGAAGgtgaattcat ... tgtgctgcagACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCAT
EST: GGTCCAGATAAGAGTCCTGAACAGCGTGCTCTTCTTGTGGAATCTAGAAG ACCGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCCATGATGCTATCTTEST: gi|349817337|gb|FQ405341.1|FQ405341
genomic: GGTCCAGATAAGAGTCCTGAACAACGTGCTCTTCTTGTGGAATCTAGAAGgtgaattcat ... tgtgctgcagACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCAT
EST: GGTCCAGATAAGAGTCCTGAACAACGTGCTCTTCTTGTGGAATCTAGAAG ACAGGAGGTTTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCAT
genomic: GGTCCAGATAAGAGTCCTGAACAACGTGCTCTTCTTGTGGAATCTAGAAGgtgaattcat ... tgtgctgcagACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCAT
ataggttcttctaatatgctctctcccctaaactattagatgatttgtgctgcagACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCATTGAAGAAAGGGAGCAGGGAATACAAGAAATCCAGCACCAAATTGGCGAG
taaactatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaactgggcacatgccctacattatatcatttctaggcattaagaataggttcttctaatatgctctctcccctaaactattagatgatttgtgctgcagACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCATTGAAGAAAGGGAGCAGGGAATACAAGAAATCCAGCACCAAATTGGCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - -gcacatg
- - - - - - - ccctaca
- - - - - - - - - - - - - - - - ctaggca
- - - - - - - - - - - - - - - - - - - - -aagaata