1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccaagccaagaagttttgacgttcactctattctgccttgtatttttttttatttttcctctttcactaaatattttgtttcatgttggtgaacccacagGCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCATGTTCATTGAAACAAGTGCCAAAGCTGGCTTCAATATAAAG
species | Vitis vinifera |
transcript | Vv02s0012g00710.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAG GCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCATEST: gi|351042357|gb|FQ442824.1|FQ442824
genomic: GATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAGgtaaagatta ... gaacccacagGCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCAT
EST: GATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAG GCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCATEST: gi|110686975|gb|EE063981.1|EE063981
genomic: GATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAGgtaaagatta ... gaacccacagGCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCAT
EST: GATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAG GCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCATEST: gi|110723851|gb|EE099164.1|EE099164
genomic: GATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAGgtaaagatta ... gaacccacagGCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCAT
EST: GATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAG GCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCATEST: gi|351032522|gb|FQ458887.1|FQ458887
genomic: GATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAGgtaaagatta ... gaacccacagGCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCAT
EST: GATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAG GCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCATEST: gi|351056494|gb|FQ455146.1|FQ455146
genomic: GATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAGgtaaagatta ... gaacccacagGCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCAT
EST: GATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAG GCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCATEST: gi|351015547|gb|FQ447376.1|FQ447376
genomic: GATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAGgtaaagatta ... gaacccacagGCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCAT
EST: GATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAG GCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCATEST: gi|110731534|gb|EE106031.1|EE106031
genomic: GATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAGgtaaagatta ... gaacccacagGCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCAT
EST: GATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAG GCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCATEST: gi|351053354|gb|FQ455690.1|FQ455690
genomic: GATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAGgtaaagatta ... gaacccacagGCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCAT
EST: GATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAG GCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCAT
genomic: GATGTTATTATCGTCCTTGTTGGAAACAAGACTGACCTTGTGGAGAAAAGgtaaagatta ... gaacccacagGCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCAT
ttttttatttttcctctttcactaaatattttgtttcatgttggtgaacccacagGCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCATGTTCATTGAAACAAGTGCCAAAGCTGGCTTCAATATAAAG
cactaaa putative branch site (score: 2)
taaatattttgtttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaagccaagaagttttgacgttcactctattctgccttgtatttttttttatttttcctctttcactaaatattttgtttcatgttggtgaacccacagGCAAGTCTCAATAGAGGAAGGAGAAGCCAAAGCTCGTGAACTTAACGTCATGTTCATTGAAACAAGTGCCAAAGCTGGCTTCAATATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
ccaagcc
- - - - - - - - - - - -cactcta
- - - - - - - - - - - - - - - -tctgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtt