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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtgtatttcgggtttagattcttttctctgagtcttctcgtgtttattcgtagtaaaagggataaaagtacagaatgttttttaagttaattcaatctggtaactaatgtgataccgcatcttgctttcgtttaccagCTCGTGGTGATTGCAGGGATAGTGTGGAACCCACCAACATCTTGCGC

Basic information

species Vitis vinifera
transcript Vv01s0244g00110.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110381547|gb|EC934750.1|EC934750
EST:     GCTTTTTTCTTGCCAGTTATGAGGACAGCCCAGCTGGAGTTTTTGATGAG                         CTCGTGGTGATTGCAGGGATAGTGTGGAACCCACCAACATCTTGCGC
genomic: GCTTTTTTCTTGCCAGTTATGAGGACAGCCCAGCTGGAGTTTTTGATGAGgttgtgtatt ... cgtttaccagCTCGTGGTGATTGCAGGGATAGTGTGGAACCCACCAACATCTTGCGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttaattcaatctggtaactaatgtgataccgcatcttgctttcgtttaccagCTCGTGGTGATTGCAGGGATAGTGTGGAACCCACCAACATCTTGCGC
                  aactaat  putative branch site (score: 2)
                                    tcttgctttcgttt  putative PPT
     aattcaat  TA-rich tract