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gtctattgccttccccacccgcccccacccccttttttttcttttcccgaaaaagcatttttgtcatcaaaacacgtcattcatttatttatagcatataacatgtgttggattctgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAGCTTGAGAAACAG
species | Vitis vinifera |
transcript | Vv01s0244g00070.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG CTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAGEST: gi|351046750|gb|FQ454360.1|FQ454360
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG CTCAGACTTGAGGAAGGGAGATGCAAGGATGCAGAGGCCAGAGEST: gi|352798824|gb|FQ478459.1|FQ478459
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAG
EST: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG CTCAGACTTGAGGAAGGGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAGEST: gi|352768718|gb|FQ467930.1|FQ467930
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG CTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAGEST: gi|351024338|gb|FQ423761.1|FQ423761
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG CTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAGEST: gi|351052036|gb|FQ455329.1|FQ455329
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG CTCAGACTTGAGGAAGGGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAGEST: gi|351037721|gb|FQ464162.1|FQ464162
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG CTCAGACTTGAGGAAGGGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAGEST: gi|351036830|gb|FQ459352.1|FQ459352
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG CTCAGACTTGAGGAAGGGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAGEST: gi|351031918|gb|FQ460175.1|FQ460175
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG CTCAGACTTGAGGAAGAGAGATGCAAGGATGCAAAGGCCAGAGTTAGAGAGEST: gi|349821835|gb|FQ412990.1|FQ412990
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG CTCAGACTTGAGGAAGAGEST: gi|351037441|gb|FQ460640.1|FQ460640
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAG
EST: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG CTCAGACTTGAGGAAGGGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAGEST: gi|351047980|gb|FQ441152.1|FQ441152
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG CTCAGACTTGAGGAAGGGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAGEST: gi|161717169|gb|FC066567.1|FC066567
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG CTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAGEST: gi|351052469|gb|FQ452502.1|FQ452502
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAG
EST: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG CTCAGACTTGAGGAAGGGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAEST: gi|351055097|gb|FQ440436.1|FQ440436
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGA
EST: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAG CTCAGACTTGAGGAAGGGAGA
genomic: GTTGATATGCTACAAGAAGAGAATGAGAACATTCTTGACAAGgtctattgcc ... tgttgtacagCTCAGACTTGAGGAAGAGAGA
aacacgtcattcatttatttatagcatataacatgtgttggattctgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAGCTTGAGAAACAG
atataac putative branch site (score: 3)
ttctgtt putative PPT
attcatttatttatag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctattgccttccccacccgcccccacccccttttttttcttttcccgaaaaagcatttttgtcatcaaaacacgtcattcatttatttatagcatataacatgtgttggattctgttgtacagCTCAGACTTGAGGAAGAGAGATGCAAGGATGCAGAGGCCAGAGTTAGAGAGCTTGAGAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT