1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgtaattatcaggcaaatgatgagatattattggatcctatagcttctagaagtaaattttgggattttcacttaaagctacttttgtttcctttgcagCTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAGGCTCTTAAAAATTTTTTGACCTCTCTCCCAGAGGACAAAAAGAACGAAA
species | Vitis vinifera |
transcript | Vv01s0150g00320.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATGATAGAAAATGG CTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAGEST: gi|110379149|gb|EC944326.1|EC944326
genomic: CTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATGATAGAAAATGGgtatgtaatc ... tcctttgcagCTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAG
EST: CTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATGATAGAAAATGG CTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAGEST: gi|30306332|gb|CB983126.1|CB983126
genomic: CTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATGATAGAAAATGGgtatgtaatc ... tcctttgcagCTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAG
EST: CTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATGATAGAAAATGG CTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAGEST: gi|110428236|gb|EC994702.1|EC994702
genomic: CTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATGATAGAAAATGGgtatgtaatc ... tcctttgcagCTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAG
EST: CTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATAATAGAAAATGG CTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAAEST: gi|110385476|gb|EC950008.1|EC950008
genomic: CTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATGATAGAAAATGGgtatgtaatc ... tcctttgcagCTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAG
EST: CTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATGATAGAAAATGG CTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAGEST: gi|26266118|gb|CA817181.1|CA817181
genomic: CTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATGATAGAAAATGGgtatgtaatc ... tcctttgcagCTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAG
EST: CTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATGATAGAAAATGG CTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAGEST: gi|110362042|gb|EC925549.1|EC925549
genomic: CTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATGATAGAAAATGGgtatgtaatc ... tcctttgcagCTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAG
EST: CTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATGATAGAAAATGG CTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAGEST: gi|351014144|gb|FQ434733.1|FQ434733
genomic: CTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATGATAGAAAATGGgtatgtaatc ... tcctttgcagCTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAG
EST: CTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATGATAGAAAATGG CTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAGEST: gi|32458387|gb|CD799561.1|CD799561
genomic: CTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATGATAGAAAATGGgtatgtaatc ... tcctttgcagCTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAG
EST: CTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATAATAGAAAATGG CTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAA
genomic: CTGAAGAGCTTGAGTCCTGGCCAGAGCAGGCATTACATGATAGAAAATGGgtatgtaatc ... tcctttgcagCTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAG
ttctagaagtaaattttgggattttcacttaaagctacttttgtttcctttgcagCTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAGGCTCTTAAAAATTTTTTGACCTCTCTCCCAGAGGACAAAAAGAACGAAA
ctacttttgtttcctt CT-rich tract
aagtaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtaattatcaggcaaatgatgagatattattggatcctatagcttctagaagtaaattttgggattttcacttaaagctacttttgtttcctttgcagCTTACTCCCAAGGACGCGTTTAAACTCTGCCGATATGATTGGATGAGGGAGGCTCTTAAAAATTTTTTGACCTCTCTCCCAGAGGACAAAAAGAACGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - -tcaggca
- - - - - - - - - - - - - - - - tggatcc
- - - - - - - - - - - - - - - - - - - - - - cttctag
- - - - - - - - - - - - - - - - - - - - - - - - - -aagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttggg