Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttcgaattctatctagattgacctttatttgttttgtttgtacaaaccaactgctccacctttgcatatgtgataatatgatggttcaatgctgattagGGAATTGTCAACAATGAGACACTTGCCTACTTCATTGGGAGAGTATACCTATTCCTAACACGTCTTGGCATAGACAAGGACAGGTTACGTTTCAGACAGC

Basic information

species Vitis vinifera
transcript Vv01s0150g00150.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00150.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os08g42560.1 (Oryza sativa), 3'ss of exon 4
----------------------gttggttcgaattctatctagattgacctttatttgttttgtttgtacaaaccaactgctccacctttgcatatgtgataatatgatggttcaatgctgatt----agGGAATTGTCAACAATGAGACACTTGCCTACTTCATTGGGAGAGTATACCTATTCCTAACACGTCTTGGCATAGACAAGGACAGGTTACGTTTCAGACAGC
                           || | | | | |  |  ||||| | | | | |||| ||||||  ||  |  || | |  ||  |    |||  || |   |   ||| ||  || ||    |||||| ||| || |||||||||||||  |||||||||||||| || || || |||||||||||| | || || || ||  || || |||| ||||| ||||
gtacatcgtcgctgccttgctgaccaatttgcagt-tgttgaatttgacatgtttctctttt-tttgtattaag-aggtgttacttctccgagc-tgtcttatt-caaaacttctatcttgtttctacagGGAACTGTTAATAATGAGACACTTGGTTACTTCATTGGGAGGGTCTATCTTTTCCTAACACGTTTGGGTATTGATAAAAACCGGCTACGCTTCAGGCAGC

upper sequence: Vv01s0150g00150.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G171688_T01 (Zea mays), 3'ss of exon 4
--------------------gttggttcgaattctatctagattgaccttta----tttgttttgtt--tgtacaaaccaactgctccacctttgcatatgtgataatatgatggttcaatgctgat-tagGGAATTGTCAACAATGAGACACTTGCCTACTTCATTGGGAGAGTATACCTATTCCTAACACGTCTTGGCATAGACAAGGACAGGTTACGTTTCAGACAGC
                      || |    ||| |    |   |||  | |      || ||||| |  | |  | ||||     |  || | |     |||   ||| | ||  |    |||   |  |||||| ||| ||||||||||| |||| |||||||||||| || || ||||| ||| | ||||  ||||| || ||||||||  |  | |||||| | || |
gtattatctcctgatatttctctgttatatatttttgacaatatgatatctgagctcttcttttgctactattgataccattctataaacttgtaatgctgtttcaatgtaatt-tatgctgcaactgcagGGAACTGTGAACAATGAGACCCTTGGCTACTTCATTGGAAGGGTCTACCTTTTCTTGACACAACTTGGGATTGACAAGGATCGTCTCCGTTTCCGTCAAC

upper sequence: Vv01s0150g00150.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G47890.1 (Glycine max), 3'ss of exon 2
-----gttggttcgaattctat-ctagattgacctttat--ttgttttgtttgtacaaaccaactgctccacctttgcatatgtgataatatgatggttcaatgctgattagGGAATTGTCAACAATGAGACACTTGCCTACTTCATTGGGAGAGTATACCTATTCCTAACACGTCTTGGCATAGACAAGGACAGGTTACGTTTCAGACAGC
     ||||||| |  ||| |   |  | | | | ||||  | ||||| |  ||      |  || || |  |||    | |||| |  | | |||||    |  || | |||||||||||||||||||||||||||  |||||||| |||||||| || |||||| | || |||||||| |||||||||||| | ||  | || || || |
gtaaggttggtttggtttcaagattgaacttatcattatgatagttttttaggtttttttcttcttcttcttcttattctttgtgct--ttttatggtgtgtt-ttggtcagGGAATTGTCAACAATGAGACACTTGGTTACTTCATCGGGAGAGTGTATCTATTCTTGACGCGTCTTGGTATAGACAAGGACCGATTGAGGTTTAGGCAAC

upper sequence: Vv01s0150g00150.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G29880.1 (Arabidopsis thaliana), 3'ss of exon 4
gttggttcgaattctatctagattgacct--ttatttgttttg----tttgtacaaaccaactgctccacctt-tgcatatgtgataatatgatggttcaatgctgattagGGAATTGTCAACAATGAGACACTTGCCTACTTCATTGGGAGAGTATACCTATTCCTAACACGTCTTGGCATAGACAAGGACAGGTTACGTTTCAGACAGC
||| ||   | || ||   | |||  |||  ||| || |  |      | | ||| ||| | |  |  | ||| |  ||   ||| | |   ||    | || |  || |||| | ||| |||||||| || || |  ||||||||||||||||| || || ||||| || ||||||||||| ||||||||  || | || ||| | ||||
gttagt---atttgtaatcatattcgcctacttaattctactaagaactcgcacacacccatttttatatcttattgatgcctgacactgaaat---cctattcgtat-agGGTACTGTGAACAATGAAACTCTAGGATACTTCATTGGGAGAGTGTATCTTTTCCTTACTCGTCTTGGCATTGACAAGGAACGGCTGCGCTTCCGTCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaccaactgctccacctttgcatatgtgataatatgatggttcaatgctgattagGGAATTGTCAACAATGAGACACTTGCCTACTTCATTGGGAGAGTATACCTATTCCTAACACGTCTTGGCATAGACAAGGACAGGTTACGTTTCAGACAGC
                     atatgtgataatat  TA-rich tract