Sequence
atgc intronic sequence ATGC exonic sequence...ttatcttttccacttctgaaaatgatttttttgcatgcttaatttgatgttaagaggttgttccttgtctaatattttttaattgttccttttttttcagGTTGAGCACATGCTAAATGACCGGTTGATACAATTTGTGAATATTGATTTGCATGATGTCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os08g42530.1 (Oryza sativa), 3'ss of exon 4
ttatcttttccacttctgaa--aatgatttttttgcatgcttaatttgatgttaagaggttgttccttgtctaatattttt-taattgttccttttttttcagGTTGAGCACATGCTAAATGACCGGTTGATACAATTTGTGAATATTGATTTGCATGATGTCAAG
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ttgtgatcccaaccttcacttcagccatttcattctagg---aacacgcggcctatgttttcttaccttgctgtcatctgtgttaatgtctatttgctggcagGTTGAGCACATGCTAAATGACAGATTGCTGAATTTTGTGGACATTGATTTGCATGATGTTAAG
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os09g33600.1 (Oryza sativa), 3'ss of exon 4
ttatcttttccacttctgaaaatgatttttttgcatgcttaatttgatgttaagaggttgttccttgtctaatattttt--taattgt-tccttttttttcagGTTGAGCACATGCTAAATGACCGGTTGATACAATTTGTGAATATTGATTTGCATGATGTCAAG
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-caggctttc-attaccaagaatggaaacaaccccagttttattagaagctgtaaccatacttcc-acttagtggtattactaataatatactctttttttagGTTGAGAATATGCTAAATGACAAGTTGCTGCAATTTGTGGACATTGATTTGCATGATGTGAAG
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G51810.1 (Glycine max), 3'ss of exon 4
ttatcttttccacttctgaaaatgatttttttgcatgcttaat---ttgatgttaagaggttgttccttgtctaatattttttaattgttccttttttttcagGTTGAGCACATGCTAAATGACCGGTTGATACAATTTGTGAATATTGATTTGCATGATGTCAAG
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---ctatttggaagtttcatcctggattttggccattatccatcagttcttggtaacacgatgtctgctacactgttaacatagattgctttcttcctgtcagGTTGAGCACATGTTAAATGACAGATTGCTTCAGTTTGTCAATATTGATTTACAAGAGGTCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatgttaagaggttgttccttgtctaatattttttaattgttccttttttttcagGTTGAGCACATGCTAAATGACCGGTTGATACAATTTGTGAATATTGATTTGCATGATGTCAAG
ttttaat putative branch site (score: 3)
ttttttaattgttcct CT-rich tract
tctaatattttttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttatcttttccacttctgaaaatgatttttttgcatgcttaatttgatgttaagaggttgttccttgtctaatattttttaattgttccttttttttcagGTTGAGCACATGCTAAATGACCGGTTGATACAATTTGTGAATATTGATTTGCATGATGTCAAG
- - - - -ccacttc
- - - - - - - - - aaaatga
- - - - - - - - - - - - - - - - gcatgct