Sequence
atgc intronic sequence ATGC exonic sequence...atgaatatgagctaatgttttattttgccctatatccattaaaaaaaatggggataagttttttgcttgaatctaacattcttttcccctatctatccagAAAATGGGGACCTTCTATGTAACTACTCTGATAATACCCAAGCAGGAATCAACTTCCAACAGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0127g00710.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G10600.2 (Arabidopsis thaliana), 3'ss of exon 3
----------------------------------------------------------------------atgaatatgagctaatgttttattttgccctatatccattaaaaAAAATGGGGATAAGTTTTTTGC-TTGAATCTAACATTCTT-TTCCCCTATCTATCCAGAAAATGG-GGACCTTCTATGTAAC-------TACTCTGATAATACCCAAGCAGGAATCAACTTCCAACAGT--------
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gtaattacatttctatttctgttcatgctgtaggaaagaggaattttttatgtaaccactctgataatacctaagcaagaatcaacttctaattctgtgagttatcttagaaagattatctcgatcattttgtggtattcaaaatgaggtgcttactcaggtgctaaaattggcagTGTCAGGCTATGAATGAAGTGGAAGTGTTTTCCATTCAAAACGAAAGAGAACTCTATCCCGTAGGATGGATTCAT
upper sequence: Vv01s0127g00710.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G10600.3 (Arabidopsis thaliana), 3'ss of exon 2
atgaatatgagctaatgtttta-ttttgccctatatccattaaaaAAAATGGGGATAAGTTTTTTGCTTGAATCTAACATTCTTTTCCCCTATCTATC-CAGAAAATGGGGACCTTCTATGTAACTACTCTGATAATACCCAAGCAGGAATCAACTTCCAACAGT
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-tcatgattcatggttgttttgcttctgttccagggttcttcgttttt-cgagtttcatgaacctgatggtaattacatttctatttctgttcatgctgtagGAAAGAGGAATTTTTTATGTAACCACTCTGATAATACCTAAGCAAGAATCAACTTCTAATTCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161716948|gb|FC068828.1|FC068828EST: ACAACACAAAGAATGATGTGGAGACTTGTGGGATTCTTGGTGCTTTCCTT AAAATGGGGACCTTCTATGTAACTACTCTGATAATACCCAA
genomic: ACAACACAAAGAATGATCTGGAGACTTGTGGGATTCTTGGTGCTTTCCTTgtaaggttca ... atctatccagAAAATGGGGACCTTCTATGTAACTACTCTGATAATACCCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatggggataagttttttgcttgaatctaacattcttttcccctatctatccagAAAATGGGGACCTTCTATGTAACTACTCTGATAATACCCAAGCAGGAATCAACTTCCAACAGT
atctaac putative branch site (score: 2)
cattcttttcccctat CT-rich tract
ataagtttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgaatatgagctaatgttttattttgccctatatccattaaaaaaaatggggataagttttttgcttgaatctaacattcttttcccctatctatccagAAAATGGGGACCTTCTATGTAACTACTCTGATAATACCCAAGCAGGAATCAACTTCCAACAGT
- - - - - gctaatg
- - - - - - - - - - - - -tgcccta
- - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - -ggggataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttga