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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatatggcttttttctgggtgcttgaattcttccactggtcatagtattaaagatatggcctacttaaatattgtatcctagattctgatttcatcttgcttcaatcacagGTTGCAGACTTTGGGCTTGCCAAACCATCAAATGACAATAATACCCATGTATCAACTCGAGTCATGGGAACTTTTGG

Basic information

species Vitis vinifera
transcript Vv01s0127g00670.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0127g00670.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G19100.1 (Glycine max), 3'ss of exon 4
----gtatgcatatggcttttttctgggtgcttgaattcttccactggtcatagtattaaagatatggcctacttaaatattgtatcctagattctgatttcatcttgcttcaatcacagGTTGCAGACTTTGGGCTTGCCAAACCATCAAATGACAATAATACCCATGTATCAACTCGAGTCATGGGAACTTTTGG
    | || ||| | | ||| |||  |     ||      |  | |  |||   ||   |   || |   |   ||||||  | |  || |||  | |||    |||| || |  |||||||||| |||||||| ||||| |    | |  |||     |||||||||||||||||| | ||||||||||| |||||
gtatgcatacattttgttttgttcatgtactatggtgaaatttatttttcaatctaggcacatta-gttttctctaaatac-gaagtctggatggtaattcacccttgttttag-cacagGTTGCTGACTTTGGACTTGCGAGGTTAGCTGATGCTGCCAATACCCATGTATCAACTAGGGTCATGGGAACCTTTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggcctacttaaatattgtatcctagattctgatttcatcttgcttcaatcacagGTTGCAGACTTTGGGCTTGCCAAACCATCAAATGACAATAATACCCATGTATCAACTCGAGTCATGGGAACTTTTGG
                           ttctgat  putative branch site (score: 3)
                                 tttcatcttgcttc  CT-rich tract
     tacttaaatattgtat  TA-rich tract