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gtatttaaactctttcaccatgtgactcatttttaatcctttgatgagtatgttaatatgagtatgttatatttttatcattgaattccatcccttgatgaagtggatttcttatgcttctattatccatttgggtttctagGTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCCTTCATCCCACACAATGAAGAGTTTTACCTAAACATGGTTTCAGAGCGAC
species | Vitis vinifera |
transcript | Vv01s0127g00260.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAGATTTGGCTCAAGTTGGTACTTTCGTGAAAGAACGTCTTGGCAAAGAG GTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCCEST: gi|110730830|gb|EE108354.1|EE108354
genomic: TAGATTTGGCTCAAGTTGGTACTTTCGTGAAAGAACGTCTTGGCAAAGAGgtatttaaac ... gggtttctagGTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCC
EST: TAGATTTGGCTCAAGTTGGTACTTTCGTGAAAGAACGTCTTGGCAAAGAG GTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCCEST: gi|294966134|gb|GW837501.1|GW837501
genomic: TAGATTTGGCTCAAGTTGGTACTTTCGTGAAAGAACGTCTTGGCAAAGAGgtatttaaac ... gggtttctagGTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCC
EST: TAGATTTGGCTCAAGTTGGTACTTTCGTGAAAGAACGTCTTGGCAAAGAG GTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCCEST: gi|71860189|gb|DT009244.1|DT009244
genomic: TAGATTTGGCTCAAGTTGGTACTTTCGTGAAAGAACGTCTTGGCAAAGAGgtatttaaac ... gggtttctagGTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCC
EST: TAGATTTGGCTCAAGTTGGTACTTTCGTGAAAGAACGTCTTGGCAAAGAG GTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCCEST: gi|110731355|gb|EE105692.1|EE105692
genomic: TAGATTTGGCTCAAGTTGGTACTTTCGTGAAAGAACGTCTTGGCAAAGAGgtatttaaac ... gggtttctagGTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCC
EST: TAGATTTGGCTCAAGTTGGTACTTTCGTGAAAGAACGTCTTGGCAAAGAG GTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCCEST: gi|110730143|gb|EE106883.1|EE106883
genomic: TAGATTTGGCTCAAGTTGGTACTTTCGTGAAAGAACGTCTTGGCAAAGAGgtatttaaac ... gggtttctagGTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCC
EST: TAGATTTGGCTCAAGTTGGTACTTTCGTGAAAGAACGTCTTGGCAAAGAG GTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCCEST: gi|111125102|gb|EE253720.1|EE253720
genomic: TAGATTTGGCTCAAGTTGGTACTTTCGTGAAAGAACGTCTTGGCAAAGAGgtatttaaac ... gggtttctagGTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCC
EST: ACTTTCGTGAAAGAACGTCTTGGTAAAGAG GTAGAGATGGGGGGATGCAGAGGGCCTATCACAGCATTCATTGTTGAACCCEST: gi|294965669|gb|GW837268.1|GW837268
genomic: ACTTTCGTGAAAGAACGTCTTGGCAAAGAGgtatttaaac ... gggtttctagGTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCC
EST: TAGATTTGGCTCAAGTTGGTACTTTCGTGAAAGAACGTCTTGGCAAAGAG GTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCCEST: gi|71863321|gb|DT012376.1|DT012376
genomic: TAGATTTGGCTCAAGTTGGTACTTTCGTGAAAGAACGTCTTGGCAAAGAGgtatttaaac ... gggtttctagGTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCC
EST: TAGATTTGGCTCAAGTTGGTACTTTCGTGAAAGAACGTCTTGGCAAAGAG GTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCCEST: gi|71861152|gb|DT010207.1|DT010207
genomic: TAGATTTGGCTCAAGTTGGTACTTTCGTGAAAGAACGTCTTGGCAAAGAGgtatttaaac ... gggtttctagGTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCC
EST: TAGATTTGGCTCAAGTTGGTACTTTCGTGAAAGAACGTCTTGGCAAAGAG GTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCCEST: gi|161714091|gb|FC064386.1|FC064386
genomic: TAGATTTGGCTCAAGTTGGTACTTTCGTGAAAGAACGTCTTGGCAAAGAGgtatttaaac ... gggtttctagGTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCC
EST: TAGATTTGGCTCAAGTTGCTACTTTCGTGAAAGAACGTCTTGGCAAAGAG GTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCC
genomic: TAGATTTGGCTCAAGTTGGTACTTTCGTGAAAGAACGTCTTGGCAAAGAGgtatttaaac ... gggtttctagGTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCC
ccatcccttgatgaagtggatttcttatgcttctattatccatttgggtttctagGTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCCTTCATCCCACACAATGAAGAGTTTTACCTAAACATGGTTTCAGAGCGAC
ccttgat putative branch site (score: 5)
tttct putative PPT
atttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttaaactctttcaccatgtgactcatttttaatcctttgatgagtatgttaatatgagtatgttatatttttatcattgaattccatcccttgatgaagtggatttcttatgcttctattatccatttgggtttctagGTAGAGATGGGGGGATGCAGAGGGCCTATCACAACATTCATTGTTGAACCCTTCATCCCACACAATGAAGAGTTTTACCTAAACATGGTTTCAGAGCGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA