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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattactagaaatctaattaagactaatctctgagataaacatatatagtttccctagcagaggtccaatattttgaaaaatgactatcactacttgtcaaaattattgctaccacttttggagcatatcttactatcctgatcctgggttgatgaagtctgacaagttgtttacaaataaccatggcagATACAAACAGAGGTAAAGCACTGAACTGGGAAAAGAGATGTGAGATAATCATTGGGACAGCAGAAGGTCTGGCCTACCTTCATGAAAATTCGACGAACAG

Basic information

species Vitis vinifera
transcript Vv01s0127g00160.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0127g00160.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G04210.1 (Glycine max), 3'ss of exon 4
gtaattactagaaatctaattaagactaatctctgagataaacatatatagtttccctagcagaggtccaatattttgaaaaatgactatcactacttgtca-aaattattgctaccacttttggagcatatcttactatcctgatcctgggttgatgaagtctgacaagttgtttacaaataaccatggcagATACAAACAGAGGTAAAGCACTGAACTGGGAAAAGAGATGTGAGATAATCATTGGGACAGCAGAAGGTCTGGCCTACCTTCATGAAAATTCGACGAACAG
                                                || || |    | |  | | || ||   |  |      ||||    || | | | |  | |||   | |||| |  | |  ||||     ||| | ||     ||  |  || | | | |   | | |  |  ||  ||||||||||| |||||  || || | | |||||||||||||||||| ||| || |||||||||||||| |||||  | |  || || ||||| || || |  |  ||
-----------------------------------------------gtaattact---gaactgatgcagtaggcttga---ctgctattttcacctataacacctcattctgatcactataagtgattatcaattcatcataat-----gtgaactaaatataata---tttctcaatttatacatggcagATAAAAACAAGGGCAAGGAATTGAACTGGGAAAAGAGATATGAAATTATCATTGGGACAGCCGAAGGATTAGTTTATCTGCATGAGAACTCCAAAACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcctgatcctgggttgatgaagtctgacaagttgtttacaaataaccatggcagATACAAACAGAGGTAAAGCACTGAACTGGGAAAAGAGATGTGAGATAATCATTGGGACAGCAGAAGGTCTGGCCTACCTTCATGAAAATTCGACGAACAG
                                        aaataac  putative branch site (score: 2)
                                ttgtttacaaataa  TA-rich tract