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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattcctcctaataatcacttacttcttattctataatcatcttttcccatatgagaatcctggctatctttctctttttctttttcatttttcttttccaagttcgtggctgacgaaatttctgattactttaattacacgcctatggaatagccactataatcatgttttacatttttctcccttcattacagGCCTTGAGATTCTATGCCAGCTATGATGTCACCGTTTGCAATATCCGAATCATAAACAGCCCTCAGTGCCATCTAAAATTTGACTACTCTGGCAGAGTGA

Basic information

species Vitis vinifera
transcript Vv01s0127g00120.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0127g00120.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA01G03400.1 (Glycine max), 3'ss of exon 4
gtaagattcctcctaataatcacttacttcttattctataatcatcttttcccatatgagaatcctggctatctttctctttttctttttcatttttcttttcca-agttcgtggctgacgaaatttctgattactttaattacacgcctatggaatagccactataatcatgttttacatttttctcccttcattacagGCCTTGAGATTCTATGCCAGCTATGATGTCACCGTTTGCAATATCCGAATCATAAACAGCCCTCAGTGCCATCTAAAATTTGACTACTCTGGCAGAGTGA
                                                                                           ||||||||| |  | |  |  |   ||| |||| || |   ||    || || |   ||||    |   ||  |   || |||||  ||||| ||         | |||||  | ||||||||  ||||| |   ||| || ||| |  ||||| ||||||||||||| |||| ||||||||||||||||||| ||||     |  | |
-------------------------------------------------------------------------------------------atttttcttctatataagtacttattga-gaaacttatatgtataaaaactaaatttctattagtttctcataa--gtcttgtttggcatttatcata------tgcagGCTATAAGATTCTACTCCAGCAACTTTGTAACAGTTCGTGATATCAGAATCATAAACAGTCCTCTGTGCCATCTAAAATTTGACAACTCAAAGGGGATTA

upper sequence: Vv01s0127g00120.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G04230.1 (Glycine max), 3'ss of exon 4
gtaagattcctcctaataatcacttacttcttattctataatcatcttttcccatatgagaatcctggctatctttctctttttctttttcatttttcttttccaagttcgtggctgacgaaatttctgattactttaattacacgcctatggaatagccacta--taatcatgttttacatttttctcccttcat-tacagGCCTTGAGATTCTATGCCAGCTATGATGTCACCGTTTGCAATATCCGAATCATAAACAGCCCTCAGTGCCATCTAAAATTTGACTACTCTGGCAGAGTGA
                                                                                               ||||| || |  |  |||  |   |||| || |     | ||| |   ||    |   |||  | | ||  |  ||||   |   ||||  |     |||| | |||||  | ||||||||  | ||| |   ||| || ||| |  ||||| ||||||||||||| ||||  |||||||||||||||||| ||||     |  | |
-----------------------------------------------------------------------------------------------ttcttctctacataagtg--tagagaaacttat-----ccttattcgtacagaaactaaatttctattagtttctcataagtcttatttggcgtttatcatatgcagGCTATAAGATTCTACTCTAGCAACTTTGTAACAGTTCGTGATATCAGAATCATAAACAGTCCTCTTTGCCATCTAAAATTTGACAACTCAAAGGGGATTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcctatggaatagccactataatcatgttttacatttttctcccttcattacagGCCTTGAGATTCTATGCCAGCTATGATGTCACCGTTTGCAATATCCGAATCATAAACAGCCCTCAGTGCCATCTAAAATTTGACTACTCTGGCAGAGTGA
                            ttttacatttttctcc  CT-rich tract
                  tataatcatgttttac  TA-rich tract