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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtcttgtctcttgcttaaatgaggactatccttcctttgcctcattgacctcatctcttaacagACGGAGGTTGTTTCGGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTTCGTGTGGATGAAGTGTTAGCTTCTTTAAACAGGATAAATGTGTCAC

Basic information

species Vitis vinifera
transcript Vv01s0026g02530.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g02530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os06g12390.2 (Oryza sativa), 3'ss of exon 6
----gtaaagtcttgtctcttgcttaaatg---aggactatccttcctttgcctcattgacctcatctcttaacagACGGAGGTTGTTTCGGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTTCGTGTGGATGAAGTGTTAGCTTCTTTAAACAGGATAAATGTGTCAC
    |||    ||| | | |||  |  ||     | | |||  | | | |   |||         | || |   ||||  | ||  | || || |||| ||| ||||| |||||||||||||| ||||| |||||||||||  |  |    |||||| |  |  | ||  |    |
gtatgtagttactttttttttgtatgtattttttgaaatattttgcatctaattcagcttaaatttttcctcttagACAAACGTCTTGTCAGCCAAGTATGTGATGAAAACAGATGATGATGCTTTTGTCCGTGTGGATGAGATACTTTTATCTTTAGATCGCGTGAACATCAGTC

upper sequence: Vv01s0026g02530.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G26810.1 (Arabidopsis thaliana), 3'ss of exon 5
--------------------gtaaagtcttgtctcttgcttaaatgaggactatcc-ttcctttgcctcattgacctcatctcttaa-cagACGGAGGTTGTTTCGGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTTCGTGTGGATGAAGTGTTAGCTTCTTTAAACAGGATAAATGTGTCAC
                    || | || |  ||     |  |  |||| | | |    |  ||||||||| | || |||| | |||| ||||| |||||||  || || |||||  ||||||| || |||||||| || ||||||||||| ||||||||||||  |||||||   | ||  ||     | |
gtaataatatagttgtctttgtcatgtttcttcctagccacagttgagtagtctttactgttttgcctcactaacgtcatattttaaacagACAGAGGTTGACTCAGCCAAGTTCATCATGAAAACGGATGATGACGCCTTTGTTCGTGTAGATGAAGTGTTACTTTCTTTATCAATGACCAACAACACTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcttaaatgaggactatccttcctttgcctcattgacctcatctcttaacagACGGAGGTTGTTTCGGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTTCGTGTGGATGAAGTGTTAGCTTCTTTAAACAGGATAAATGTGTCAC
                                 cattgac  putative branch site (score: 3)
                                       cctcatctctt  CT-rich tract
     ttaaatga  TA-rich tract