1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tacatgcattcacaacctcatgcaatgacaattgacttcaactaagtttgtgctgccactcttccatcctgacattttctttcttccacacatcctacagATGATCCATTTGAACATGTTGGTTCCATACTTGTGAACATCTCAAAGAAAGACTCAGGAAGGAAAATGTTGTTGGATCCTAAGCGAGGGATGCTAAAGCA
species | Vitis vinifera |
transcript | Vv01s0026g02280.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTTATGAAGCTTGTGAGATCATTCTGTACATCCTCTACTGAAACAACTG ATGATCCATTTGAACATGTTGGTTCCATACTTGTGAACATCTCAAAGAAAGEST: gi|110363261|gb|EC926837.1|EC926837
genomic: TCTTATGAAGCTTGTGAGATCATTCTGTACATCCTCTACTGAAACAACTGgtgtgtttgt ... catcctacagATGATCCATTTGAACATGTTGGTTCCATACTTGTGAACATCTCAAAGAAAG
EST: TCTTATGAAGCTTGTGAGATCATTCTGTACATCCTCTACTGAAACAACTG ATGATCCATTTGAACATGTTGGTTCCATACTTGTGAACATCTCAAAGAAAG
genomic: TCTTATGAAGCTTGTGAGATCATTCTGTACATCCTCTACTGAAACAACTGgtgtgtttgt ... catcctacagATGATCCATTTGAACATGTTGGTTCCATACTTGTGAACATCTCAAAGAAAG
gtttgtgctgccactcttccatcctgacattttctttcttccacacatcctacagATGATCCATTTGAACATGTTGGTTCCATACTTGTGAACATCTCAAAGAAAGACTCAGGAAGGAAAATGTTGTTGGATCCTAAGCGAGGGATGCTAAAGCA
tcctgac putative branch site (score: 2)
ttttctttcttccaca CT-rich tract
attttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacatgcattcacaacctcatgcaatgacaattgacttcaactaagtttgtgctgccactcttccatcctgacattttctttcttccacacatcctacagATGATCCATTTGAACATGTTGGTTCCATACTTGTGAACATCTCAAAGAAAGACTCAGGAAGGAAAATGTTGTTGGATCCTAAGCGAGGGATGCTAAAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
-acatgca
- - - - - cacaacc
- - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - caactaa
- - - - - - - - - - - - - - - - - - - - - - - - - -gctgcca