1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgtatatgatatgatattgacatttttttgtttgctgcaaagcgtgttatcaatttcctagaagttccatgcattaaatatttttggtggtatgttttctagGAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTGTCCACTGAAGCAGAGTTAAAG
species | Vitis vinifera |
transcript | Vv01s0026g00990.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTGEST: gi|27585723|gb|CB008418.1|CB008418
genomic: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtgtatatga ... tgttttctagGAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTG
EST: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTGEST: gi|110360358|gb|EC923399.1|EC923399
genomic: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtgtatatga ... tgttttctagGAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTG
EST: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTGEST: gi|110383536|gb|EC947914.1|EC947914
genomic: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtgtatatga ... tgttttctagGAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTG
EST: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTGEST: gi|27583148|gb|CB005843.1|CB005843
genomic: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtgtatatga ... tgttttctagGAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTG
EST: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTGEST: gi|30298455|gb|CB975249.1|CB975249
genomic: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtgtatatga ... tgttttctagGAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTG
EST: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTGEST: gi|110384826|gb|EC949291.1|EC949291
genomic: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtgtatatga ... tgttttctagGAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTG
EST: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTGEST: gi|110703998|gb|EE081422.1|EE081422
genomic: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtgtatatga ... tgttttctagGAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTG
EST: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTGEST: gi|110415427|gb|EC981335.1|EC981335
genomic: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtgtatatga ... tgttttctagGAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTG
EST: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAAAGAAATA-GAAAGCTGATCTTATCTCATGAGCTEST: gi|110423195|gb|EC989535.1|EC989535
genomic: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtgtatatga ... tgttttctagGAGCGTGATCCAATTGAAAGAA-TAAGAAAGCTGATCTTATCTCATGAGCT
EST: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTGEST: gi|32245966|gb|CD711785.1|CD711785
genomic: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtgtatatga ... tgttttctagGAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTG
EST: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAG GAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTG
genomic: ATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtgtatatga ... tgttttctagGAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTG
tatcaatttcctagaagttccatgcattaaatatttttggtggtatgttttctagGAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTGTCCACTGAAGCAGAGTTAAAG
tgttttct CT-rich tract
atgcattaaatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtatatgatatgatattgacatttttttgtttgctgcaaagcgtgttatcaatttcctagaagttccatgcattaaatatttttggtggtatgttttctagGAGCGTGATCCAATTGAAAGAATAAGAAAGCTGATCTTATCTCATGAGCTGTCCACTGAAGCAGAGTTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC